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[191591_at] protein-tyrosine phophatase

Description B0207.1 /REP_DB=WormBase Gene ID /WP=CE07679 /TR=O01435 /GB=AAB52456.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=protein-tyrosine phophatase
Cluster 6grp_total > 99      4grp_total > 05      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 25.8
(-1.2)
A 		6.4
(-3)
A 		7.5
(-2.9)
A 		71.7
(3)
A 		65
B 20.1
(-0.9)
A 		6.2
(-2.7)
A 		3.6
(-3)
A 		50.3
(3)
A 		47
C 27.1
(-0.7)
A 		8
(-3)
A 		17.3
(-1.9)
A 		57
(3)
A 		49
avr 24.3
(-1) 		6.9
(-3) 		9.5
(-2.7) 		59.7
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 11.1
(-1)
A 		2.5
(-3)
A 		4.2
(-2.6)
A 		10.1
(-1.2)
A 		28.5
(3)
A 		12.9
(-0.6)
A 		26
B 3.1
(-2.8)
A 		4.9
(-2.3)
A 		9.7
(-0.9)
A 		2.2
(-3)
A 		7.1
(-1.6)
A 		23.8
(3)
A 		22
C 4.3
(-2.7)
A 		5.8
(-2.6)
A 		2.3
(-3)
A 		2.1
(-3)
A 		40.8
(1.4)
A 		54.5
(3)
A 		52
avr 6.2
(-2.6) 		4.4
(-3) 		5.4
(-2.8) 		4.8
(-2.9) 		25.5
(1.9) 		30.4
(3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 9.4
(2.3)
A 		1.4
(-3)
A 		2
(-2.6)
A 		10.5
(3)
A 		9
B 6.4
(0.4)
A 		1.5
(-2.6)
A 		0.8
(-3)
A 		10.7
(3)
A 		10
C 9
(2.5)
A 		2.3
(-3)
A 		6
(0)
A 		9.6
(3)
A 		7
avr 8.3
(1.6) 		1.7
(-3) 		2.9
(-2.2) 		10.3
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 2
(-2.1)
A 		0.9
(-3)
A 		0.9
(-3)
A 		2.6
(-1.7)
A 		8.6
(3)
A 		3.1
(-1.3)
A 		8
B 1.1
(-2.6)
A 		1.6
(-2.3)
A 		2.4
(-1.7)
A 		0.6
(-3)
A 		2.9
(-1.3)
A 		8.9
(3)
A 		8
C 1.6
(-2.6)
A 		1.8
(-2.5)
A 		0.6
(-2.9)
A 		0.4
(-3)
A 		13.2
(1.3)
A 		18.2
(3)
A 		18
avr 1.6
(-2.7) 		1.4
(-2.9) 		1.3
(-2.9) 		1.2
(-3) 		8.2
(1.7) 		10.1
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191591_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1825
Sequence Type Exemplar sequence
Representative Public ID B0207.1 NCBI
Target Description B0207.1 /REP_DB=WormBase Gene ID /WP=CE07679 /TR=O01435 /GB=AAB52456.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=protein-tyrosine phophatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059321(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059321 NCBI Caenorhabditis elegans B0207.1 (B0207.1) mRNA, complete cds. 11/11 None
GENEFINDER00000009186 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5972573:5975330:1 11/11 None
SNAP00000009179 ENSEMBL cdna:SNAP chromosome:CEL140:I:5972800:5975330:1 11/11 None
B0207.1 ENSEMBL cdna:known chromosome:CEL140:I:5973197:5975330:1 gene:B0207.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5972799-5975330(+) 100.0 100.0
Public Domain and Genome References
Gene Title protein-tyrosine phophatase
Ensembl B0207.1
Entrez Gene 181834 Entrez gene
SwissProt O01435 EMBL-EBI
WormBase CE36625 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
4721 phosphoprotein phosphatase activity inferred from electronic annotation QuickGO AmiGO
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52456 Hypothetical protein B0207.1 [Caenorhabditis elegans] ref|NP_491722.2| B0207.1 [Caenorhabditis elegans] 0.0
blast CAE60407 Hypothetical protein CBG04012 [Caenorhabditis briggsae] 1.0E-118
blast CAE58977 Hypothetical protein CBG02250 [Caenorhabditis briggsae] 1.0E-103
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 6.6E-95
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 6.6E-95
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 6.6E-95
Sequence
Target Sequence 
>C. ELEGANS:191591_AT
cattggcacaattggcctgaccacggagtaccggagagttatatgtcaccattacatctt
cttaatatcttcaggagtcaccaaaagcccatattgattcattgctcagctggtgttggt
cgaactggaactcttgctctcatactaattgccctccagactcttcgttcagttgatttc
tctggtattcgtccacttttcacaagactccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTGGCACAATTGGCCTGACCACG 274 217 1552 Antisense
TGGCCTGACCACGGAGTACCGGAGA 252 545 1564 Antisense
GTACCGGAGAGTTATATGTCACCAT 518 457 1579 Antisense
TCTTCAGGAGTCACCAAAAGCCCAT 594 615 1619 Antisense
GCCCATATTGATTCATTGCTCAGCT 391 287 1638 Antisense
ATTGCTCAGCTGGTGTTGGTCGAAC 569 5 1652 Antisense
TTGGTCGAACTGGAACTCTTGCTCT 366 707 1667 Antisense
TCTTGCTCTCATACTAATTGCCCTC 130 619 1683 Antisense
GACTCTTCGTTCAGTTGATTTCTCT 449 373 1710 Antisense
TGATTTCTCTGGTATTCGTCCACTT 302 565 1725 Antisense
TTCGTCCACTTTTCACAAGACTCCG 25 697 1739 Antisense
Sequence Source Affymetrix Proprietary Database