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[191586_at] 7TM chemoreceptor, srh family

Description C50H11.7 /REP_DB=WormBase Gene ID /WP=CE08923 /GEN=srh-185 /TR=O16472 /GB=AAG23995.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 46      4grp_total > 11      6grp_cgc > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 30.5
(-0.5)
A 		10.6
(-3)
A 		13.1
(-2.7)
A 		59.1
(3)
A 		49
B 5.9
(-2.6)
A 		13.8
(3)
A 		5.3
(-3)
A 		7.2
(-1.7)
A 		9
C 9
(-2.2)
A 		21.4
(0)
A 		4.5
(-3)
A 		37.9
(3)
A 		33
avr 15.1
(-1.3) 		15.3
(-1.3) 		7.6
(-3) 		34.7
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 8.5
(1.9)
A 		6.6
(0.3)
A 		9.8
(3)
A 		5.8
(-0.4)
A 		4.3
(-1.6)
A 		2.7
(-3)
A 		7
B 6.1
(-2.7)
A 		47.3
(3)
A 		3.6
(-3)
A 		6
(-2.7)
A 		12.6
(-1.8)
A 		26.2
(0.1)
A 		44
C 21.2
(0.8)
A 		9.5
(-2.3)
A 		8.7
(-2.5)
A 		6.7
(-3)
A 		6.9
(-2.9)
A 		29.9
(3)
A 		23
avr 11.9
(-0.7) 		21.1
(3) 		7.4
(-2.5) 		6.2
(-3) 		7.9
(-2.3) 		19.6
(2.4) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 11.1
(3)
A 		2.3
(-3)
A 		3.4
(-2.3)
A 		8.6
(1.3)
A 		9
B 1.9
(-1.1)
A 		3.4
(3)
A 		1.2
(-3)
A 		1.5
(-2.2)
A 		2
C 3
(-1.3)
A 		6.2
(2.8)
A 		1.6
(-3)
A 		6.4
(3)
A 		5
avr 5.3
(2.6) 		4
(0.4) 		2.1
(-3) 		5.5
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.6
(0.4)
A 		2.3
(3)
A 		2.1
(2.3)
A 		1.5
(0)
A 		1.3
(-0.8)
A 		0.7
(-3)
A 		2
B 2.1
(-2.5)
A 		15.7
(3)
A 		0.9
(-3)
A 		1.6
(-2.7)
A 		5.1
(-1.3)
A 		9.8
(0.6)
A 		15
C 7.9
(1.5)
A 		2.9
(-2)
A 		2.2
(-2.4)
A 		1.4
(-3)
A 		2.2
(-2.4)
A 		10
(3)
A 		9
avr 3.9
(-0.4) 		7
(3) 		1.7
(-2.8) 		1.5
(-3) 		2.9
(-1.5) 		6.8
(2.8) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191586_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14838
Sequence Type Exemplar sequence
Representative Public ID C50H11.7 NCBI
Target Description C50H11.7 /REP_DB=WormBase Gene ID /WP=CE08923 /GEN=srh-185 /TR=O16472 /GB=AAG23995.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071435(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071435 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-185) (srh-185) mRNA, complete cds. 11/11 None
SNAP00000043562 ENSEMBL cdna:SNAP chromosome:CEL140:V:3066301:3070934:1 11/11 None
C50H11.7 ENSEMBL cdna:known chromosome:CEL140:V:3066055:3067324:1 gene:C50H11.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3066054-3067324(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-185
Ensembl C50H11.7
Entrez Gene 191886 Entrez gene
SwissProt O16472 EMBL-EBI
WormBase CE08923 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503836 Serpentine Receptor, class H family member (srh-185) [Caenorhabditis elegans] gb|AAG23995.1| Serpentine receptor, class h protein 185 [Caenorhabditis elegans] 1.0E-171
blast NP_503836 Serpentine Receptor, class H family member (srh-185) [Caenorhabditis elegans] gb|AAG23995.1| Serpentine receptor, class h protein 185 [Caenorhabditis elegans] 1.0E-131
blast NP_505331 Serpentine Receptor, class H family member (srh-201) [Caenorhabditis elegans] gb|AAC48111.1| Serpentine receptor, class h protein 201 [Caenorhabditis elegans] 1.0E-39
blast AAC24275 Serpentine receptor, class h protein 190 [Caenorhabditis elegans] ref|NP_504079.2| Serpentine Receptor, class H family member (srh-190) [Caenorhabditis elegans] 9.0E-39
blast CAE56887 Hypothetical protein CBG24726 [Caenorhabditis briggsae] 2.0E-31
blast CAE58050 Hypothetical protein CBG01127 [Caenorhabditis briggsae] 2.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.1E-92
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503836.1 7 20-42,63-85,100-119,140-162,187-209,245-267,277-299
C50H11.7 7 20-42,63-85,100-119,140-162,187-209,245-267,277-299
SNAP00000043562 5 20-38,58-80,105-127,163-185,195-217
Sequence
Target Sequence 
>C. ELEGANS:191586_AT
tgcagttttcaagcgcataccgtgccttccagaatttttccagaatgctccattttttgt
gctatccatcgaaatttccactattataatcgcattcactgttcttgtactagttgtgat
ttcagaggtgtttttcttcacaatgatcatacttttattatgttcggagcaagtgcaaaa
tcatcaactatcttcaggagcatttcgagctcgaaatatgattcttttcaagttacatgc
ccaaataataattccgctacccaccctggcaatcccactagcttacgctatgttctccat
aatcatggactattacagccaggcgttcaataatttattgattatatgtgcttctctaca
tggattaatttcctctgctgtattggttataatgcatgaggattatcgaaaagtgttgcc
ttgcttcagacagaatatgtcaagtgttgaggaaattcaagaaaattccgtgtgccccgt
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCAGTTTTCAAGCGCATACCGTGC 561 577 519 Antisense
TGCTCCATTTTTTGTGCTATCCATC 11 583 564 Antisense
GCTATCCATCGAAATTTCCACTATT 20 305 579 Antisense
AATCGCATTCACTGTTCTTGTACTA 291 169 606 Antisense
GATTCTTTTCAAGTTACATGCCCAA 79 431 738 Antisense
GCCCAAATAATAATTCCGCTACCCA 696 285 757 Antisense
GCAATCCCACTAGCTTACGCTATGT 168 323 787 Antisense
GACTATTACAGCCAGGCGTTCAATA 695 371 826 Antisense
GATTAATTTCCTCTGCTGTATTGGT 569 429 881 Antisense
AAGTGTTGCCTTGCTTCAGACAGAA 407 159 929 Antisense
TCAAGAAAATTCCGTGTGCCCCGTA 2 629 975 Antisense
Sequence Source Affymetrix Proprietary Database