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[191583_s_at] beta-ureidopropionase (rat)

Description F13H8.7 /REP_DB=WormBase Gene ID /WP=CE02641 /TR=Q19437 /GB=AAK31488.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=beta-ureidopropionase (rat)
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 04      4grp_highest_8_8 > 41      4grp_high_8_8 > 50      6grp_highest_nonorm > 14      6grp_total > 14      4grp_total > 53      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4886
1 2 3 4 range
A 5532.3
(3)
P 		4236.4
(1.2)
P 		3412.9
(0.1)
P 		1107.6
(-3)
P 		4425
B 5935.8
(3)
P 		3784.6
(0.3)
P 		3780.8
(0.3)
P 		1067.9
(-3)
P 		4868
C 5645.6
(3)
P 		3536.4
(0.2)
P 		3509
(0.2)
P 		1049.4
(-3)
P 		4596
avr 5704.6
(3) 		3852.5
(0.6) 		3567.6
(0.2) 		1075
(-3) 		4630

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5272
1 2 3 4 5 6 range
A 6279.3
(3)
P 		4856.5
(1.4)
P 		4074.7
(0.5)
P 		2547.7
(-1.2)
P 		2943.7
(-0.8)
P 		1007.2
(-3)
P 		5272
B 5180.6
(3)
P 		4860.6
(2.5)
P 		4559.5
(2)
P 		3060
(-0.3)
P 		3213.1
(-0)
P 		1289.6
(-3)
P 		3891
C 4465.9
(2.4)
P 		4811.7
(3)
P 		3630.9
(1)
P 		2985.2
(-0.1)
P 		2528.3
(-0.9)
P 		1262.3
(-3)
P 		3549
avr 5308.6
(3) 		4842.9
(2.3) 		4088.4
(1.2) 		2864.3
(-0.6) 		2895
(-0.5) 		1186.4
(-3) 		4122
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1852
1 2 3 4 range
A 2014.3
(3)
P 		919.6
(-0.5)
P 		892.2
(-0.6)
P 		162.1
(-3)
P 		1852
B 1892.9
(3)
P 		934.7
(-0.5)
P 		876.1
(-0.7)
P 		227.6
(-3)
P 		1665
C 1868.9
(3)
P 		1016.7
(-0)
P 		1223
(0.7)
P 		176.9
(-3)
P 		1692
avr 1925.4
(3) 		957
(-0.3) 		997.1
(-0.2) 		188.9
(-3) 		1737

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1557
1 2 3 4 5 6 range
A 1157.5
(0.7)
P 		1727.2
(3)
P 		887.4
(-0.4)
P 		646.2
(-1.4)
P 		888.3
(-0.4)
P 		245.2
(-3)
P 		1482
B 1802.6
(3)
P 		1617.9
(2.2)
P 		1107.2
(-0.2)
P 		810.5
(-1.5)
P 		1305.4
(0.7)
P 		480.9
(-3)
P 		1322
C 1655.3
(3)
P 		1468.2
(2.1)
P 		924.1
(-0.6)
P 		600.3
(-2.1)
P 		818.1
(-1.1)
P 		422.6
(-3)
P 		1233
avr 1538.5
(2.7) 		1604.4
(3) 		972.9
(-0.1) 		685.7
(-1.5) 		1003.9
(0.1) 		382.9
(-3) 		1222
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191583_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5582
Sequence Type Exemplar sequence
Representative Public ID F13H8.7 NCBI
Target Description F13H8.7 /REP_DB=WormBase Gene ID /WP=CE02641 /TR=Q19437 /GB=AAK31488.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=beta-ureidopropionase (rat)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062860(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062860 NCBI Caenorhabditis elegans F13H8.7 (F13H8.7) mRNA, complete cds. 11/11 None
SNAP00000031311 ENSEMBL cdna:SNAP chromosome:CEL140:II:6288459:6290039:-1 11/11 None
GENEFINDER00000031316 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6288459:6290039:-1 11/11 None
F13H8.7.1 ENSEMBL cdna:known chromosome:CEL140:II:6288363:6290045:-1 gene:F13H8.7 11/11 None
F13H8.7.2 ENSEMBL cdna:known chromosome:CEL140:II:6288376:6290047:-1 gene:F13H8.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6288455-6290036(-) 100.0 100.0
Public Domain and Genome References
Gene Title beta-ureidopropionase (rat)
Ensembl F13H8.7
Entrez Gene 174040 Entrez gene
SwissProt Q19437 EMBL-EBI
WormBase CE02641 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:247275_AT beta-ureidopropionase, putative / beta-alanine synthase, putative at
CANINE_2:CFAAFFX.21377.1.S1_AT similar to Beta-ureidopropionase (Beta-alanine synthase) (N-carbamoyl-beta-alanine amidohydrolase) (BUP-1) cfa
DROSOPHILA_2:1630038_AT dm
DROSGENOME1:153777_AT dm
CHICKEN:GGA.13071.1.S1_AT ureidopropionase, beta gga
HG-U133_PLUS_2:224043_S_AT ureidopropionase, beta hs
HG-U133B:224043_S_AT ureidopropionase, beta hs
HG-U133_PLUS_2:224042_AT ureidopropionase, beta hs
HG-U133B:224042_AT ureidopropionase, beta hs
HG-U133_PLUS_2:228219_S_AT ureidopropionase, beta hs
HG-U133B:228219_S_AT ureidopropionase, beta hs
HG-U133_PLUS_2:220507_S_AT ureidopropionase, beta hs
HG-U133A:220507_S_AT ureidopropionase, beta hs
HG-FOCUS:220507_S_AT ureidopropionase, beta hs
HG-U133A_2:220507_S_AT ureidopropionase, beta hs
U133_X3P:G7706508_3P_A_AT ureidopropionase, beta hs
U133_X3P:G6288770_3P_AT ureidopropionase, beta hs
U133_X3P:G6288770_3P_A_AT ureidopropionase, beta hs
U133_X3P:HS.126926.2.S1_3P_A_AT ureidopropionase, beta hs
U133_X3P:224042_3P_AT ureidopropionase, beta hs
HG-U95E:76455_AT ureidopropionase, beta hs
HG-U95E:90368_AT ureidopropionase, beta hs
HG-U133_PLUS_2:241123_AT Ureidopropionase, beta hs
HG-U133B:241123_AT Ureidopropionase, beta hs
U133_X3P:HS.282426.0.A1_3P_AT Ureidopropionase, beta hs
MOUSE430_2:1460244_AT ureidopropionase, beta mm
MOE430A:1460244_AT ureidopropionase, beta mm
MOUSE430A_2:1460244_AT ureidopropionase, beta mm
MG-U74BV2:110420_AT ureidopropionase, beta mm
RG-U34A:M97662_AT ureidopropionase, beta rn
RAE230A:1368245_AT ureidopropionase, beta rn
RAT230_2:1368245_AT ureidopropionase, beta rn
RG-U34B:RC_AI044976_AT Ureidopropionase, beta rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6807 nitrogen compound metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK31488 Hypothetical protein F13H8.7 [Caenorhabditis elegans] ref|NP_495261.1| F13H8.7 [Caenorhabditis elegans] 0.0
blast CAE59285 Hypothetical protein CBG02618 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003010 EMBL-EBI Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1.4E-73
Sequence
Target Sequence 
>C. ELEGANS:191583_S_AT
gtgatttctcatactggacgggttatcggaagatctagaaagaatcatattccaagagtt
ggagattttaatgaatctacatactatatggagtccacacttggtcatccagtttttgaa
accaaatacggtcgtatcggaatcaatatttgttacggacgccatcatccacaaaattgg
atgatgtacgctcttaacggtgcagagatcatcttcaatccatcagcaacagttggtgct
ctcagtgaaccactctggggtatcgaagcacgaaatgctgccattgccaatcacgtcttc
acagttggaattaaccgcgtgggcactgaagtcttcccaaatgaatttaccagtggaaat
gggcaaccagcgcacaaagacttcggtcacttttatggatccagttatattgctgctcct
gatggtagccgtactccagcattatctcgtgttcgtgagggagttctcattgctgaactc
gacttaaatctgtgtcgtcaatgcaaggatgcttggggattcagaatgacaaaccgtctc
gacatgtacgctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGATTTCTCATACTGGACGGGTTA 308 485 565 Antisense
TGGAGTCCACACTTGGTCATCCAGT 433 549 653 Antisense
TATTTGTTACGGACGCCATCATCCA 607 661 711 Antisense
GATGATGTACGCTCTTAACGGTGCA 322 411 744 Antisense
ATCATCTTCAATCCATCAGCAACAG 210 31 772 Antisense
AGTTGGTGCTCTCAGTGAACCACTC 347 63 795 Antisense
CGAAATGCTGCCATTGCCAATCACG 282 253 835 Antisense
TAACCGCGTGGGCACTGAAGTCTTC 682 637 876 Antisense
ACCAGCGCACAAAGACTTCGGTCAC 106 87 930 Antisense
TATTGCTGCTCCTGATGGTAGCCGT 523 659 972 Antisense
ACAAACCGTCTCGACATGTACGCTC 137 111 1093 Antisense
Sequence Source Affymetrix Proprietary Database