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[191582_at] 7TM chemoreceptor, str family

Description K02H11.2 /REP_DB=WormBase Gene ID /WP=CE18000 /GEN=str-240 /TR=O61981 /GB=AAC17787.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 93      4grp_total > 03      6grp_cgc > 99      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 23
(-1.9)
A 		10.3
(-3)
A 		17
(-2.4)
A 		76.7
(3)
A 		66
B 12.2
(-1.9)
A 		7.2
(-3)
A 		8.7
(-2.7)
A 		34.5
(3)
A 		27
C 8.9
(-2.5)
A 		10.7
(-2.3)
A 		4.8
(-3)
A 		55.2
(3)
A 		50
avr 14.7
(-2.3) 		9.4
(-3) 		10.2
(-2.9) 		55.5
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 6.9
(-2)
A 		10.2
(-1.2)
A 		26.5
(3)
A 		3.1
(-3)
A 		5.6
(-2.4)
A 		8.6
(-1.6)
A 		23
B 9.8
(-0.9)
A 		8.3
(-1.5)
A 		8.9
(-1.2)
A 		10.2
(-0.7)
A 		19.7
(3)
A 		4.4
(-3)
A 		15
C 12
(-1.5)
A 		10.8
(-1.7)
A 		9.8
(-1.9)
A 		8.2
(-2.3)
A 		32.4
(3)
A 		4.9
(-3)
A 		28
avr 9.6
(-1.4) 		9.8
(-1.3) 		15.1
(1.1) 		7.2
(-2.5) 		19.2
(3) 		6
(-3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 8.4
(1.1)
A 		2.2
(-3)
A 		4.5
(-1.5)
A 		11.2
(3)
A 		9
B 3.9
(-0.7)
A 		1.8
(-3)
A 		2
(-2.8)
A 		7.3
(3)
A 		6
C 3
(-2)
A 		3.1
(-1.9)
A 		1.7
(-3)
A 		9.3
(3)
A 		8
avr 5.1
(-0.7) 		2.4
(-3) 		2.7
(-2.7) 		9.3
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.3
(-2.4)
A 		3.6
(0.4)
A 		5.8
(3)
A 		0.8
(-3)
A 		1.7
(-1.9)
A 		2.1
(-1.4)
A 		5
B 3.4
(-1.3)
A 		2.8
(-1.9)
A 		2.2
(-2.4)
A 		2.7
(-2)
A 		8
(3)
A 		1.6
(-3)
A 		6
C 4.5
(-1.1)
A 		3.3
(-1.9)
A 		2.5
(-2.5)
A 		1.7
(-3)
A 		10.5
(3)
A 		1.7
(-3)
A 		9
avr 3.1
(-1.3) 		3.2
(-1.2) 		3.5
(-0.8) 		1.7
(-3) 		6.7
(3) 		1.8
(-2.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191582_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14972
Sequence Type Exemplar sequence
Representative Public ID K02H11.2 NCBI
Target Description K02H11.2 /REP_DB=WormBase Gene ID /WP=CE18000 /GEN=str-240 /TR=O61981 /GB=AAC17787.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071035(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071035 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-240) (str-240) mRNA, complete cds. 11/11 None
SNAP00000029155 ENSEMBL cdna:SNAP chromosome:CEL140:V:1519991:1520802:-1 9/11 None
GENEFINDER00000029161 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1516780:1521774:-1 10/11 None
K02H11.2 ENSEMBL cdna:known chromosome:CEL140:V:1520292:1521774:-1 gene:K02H11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1520291-1521774(-) 97.79 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-240
Ensembl K02H11.2
Entrez Gene 192042 Entrez gene
SwissProt O61981 EMBL-EBI
WormBase CE18000 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17787 Seven tm receptor protein 240 [Caenorhabditis elegans] ref|NP_503436.1| Seven TM Receptor family member (str-240) [Caenorhabditis elegans] 1.0E-177
blast AAC17787 Seven tm receptor protein 240 [Caenorhabditis elegans] ref|NP_503436.1| Seven TM Receptor family member (str-240) [Caenorhabditis elegans] 1.0E-163
blast AAC17786 Seven tm receptor protein 243 [Caenorhabditis elegans] ref|NP_503437.1| Seven TM Receptor family member (str-243) [Caenorhabditis elegans] 3.0E-67
blast NP_503833 Seven TM Receptor family member (str-244) [Caenorhabditis elegans] gb|AAG24006.1| Seven tm receptor protein 244 [Caenorhabditis elegans] 3.0E-67
blast AAC17786 Seven tm receptor protein 243 [Caenorhabditis elegans] ref|NP_503437.1| Seven TM Receptor family member (str-243) [Caenorhabditis elegans] 7.0E-63
blast NP_503833 Seven TM Receptor family member (str-244) [Caenorhabditis elegans] gb|AAG24006.1| Seven tm receptor protein 244 [Caenorhabditis elegans] 2.0E-62
blast AAC17787 Seven tm receptor protein 240 [Caenorhabditis elegans] ref|NP_503436.1| Seven TM Receptor family member (str-240) [Caenorhabditis elegans] 2.0E-55
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 5.3E-9
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.2E-4
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.2E-4
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.2E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503436.1 7 10-32,39-61,91-113,133-155,205-227,248-270,285-307
K02H11.2 7 10-32,39-61,91-113,133-155,205-227,248-270,285-307
SNAP00000029155 2 30-52,67-89
GENEFINDER00000029161 11 10-32,39-61,66-84,91-113,133-155,194-213,233-255,268-290,344-366,413-435,464-486
Sequence
Target Sequence 
>C. ELEGANS:191582_AT
ggaattttctacgcaacagccatagaatttacactgagcgagaatgaaaagactaatatg
gttttaagaaagacgtacctatcaaatcgaacattgaaagtggaaaatttaatctatata
gggcaaaattattggttcactgatgagaagggcaacgtggctataaatttgatgagttgg
tttggaattgcagttcctatatttacagtgattttatcatcgtccacaatgctaattttc
gggacacttagctatcgagcagtggcttcttttgccaaaaacacgagcaactcaaaacaa
tatcactcgatgcaacttcaacttttgaatgcattagttttgcaagcactaattccagtt
tttctgatgcaactcccatcttttattgcgttcacttcaccaatatttcacaaaggaaat
gagatggctggagcagtacttggaattgcagtggcgttgtatccagttttggatccactg
ccaaccttaataattatcaagaattttcggaatgctttgttcaaaccttgtacacggaag
aagatctacgccgttcaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAATTTTCTACGCAACAGCCATAG 105 533 439 Antisense
GTGATTTTATCATCGTCCACAATGC 694 483 646 Antisense
GCTATCGAGCAGTGGCTTCTTTTGC 468 303 689 Antisense
ATCACTCGATGCAACTTCAACTTTT 79 29 740 Antisense
TCCAGTTTTTCTGATGCAACTCCCA 44 589 792 Antisense
AACTCCCATCTTTTATTGCGTTCAC 6 143 809 Antisense
TGCGTTCACTTCACCAATATTTCAC 41 585 825 Antisense
GCAGTGGCGTTGTATCCAGTTTTGG 542 311 886 Antisense
GATCCACTGCCAACCTTAATAATTA 124 415 910 Antisense
TGCTTTGTTCAAACCTTGTACACGG 437 579 951 Antisense
GGAAGAAGATCTACGCCGTTCAACA 580 529 974 Antisense
Sequence Source Affymetrix Proprietary Database