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[191580_s_at] TAT-binding homolog like

Description F11A10.1 /REP_DB=WormBase Gene ID /WP=CE20665 /TR=SW:P54816 /GB=CAA92684.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=TAT-binding homolog like
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 57      4grp_highest_8_8 > 14      4grp_high_8_8 > 15      6grp_highest_nonorm > 82      6grp_total > 58      4grp_total > 09      6grp_highest_sub > Cu      6grp_cgc > 38      6grp_high1_sub > Cu      6grp_cgc_sub > Da      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 454
1 2 3 4 range
A 226.6
(-3)
P 		323.1
(-1.5)
P 		422.1
(0.1)
P 		606.8
(3)
P 		380
B 334.2
(-3)
P 		346.6
(-2.8)
P 		339.8
(-2.9)
P 		680.8
(3)
P 		347
C 374.8
(-2.4)
P 		348
(-3)
P 		406.9
(-1.8)
P 		634.7
(3)
P 		287
avr 311.9
(-3) 		339.2
(-2.5) 		389.6
(-1.6) 		640.8
(3) 		329

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 338
1 2 3 4 5 6 range
A 454.5
(1.8)
P 		293
(-2)
P 		252.4
(-3)
P 		365.2
(-0.3)
P 		343.2
(-0.9)
P 		507.3
(3)
P 		255
B 419.8
(0.3)
P 		240.2
(-2.9)
P 		257.4
(-2.6)
P 		305.5
(-1.8)
P 		236.7
(-3)
P 		574.7
(3)
P 		338
C 385.3
(-0.3)
P 		375.5
(-0.6)
P 		440.6
(1.4)
P 		293.1
(-3)
P 		358.9
(-1.1)
P 		496.1
(3)
P 		203
avr 419.9
(0.1) 		302.9
(-3) 		316.8
(-2.6) 		321.3
(-2.5) 		312.9
(-2.7) 		526
(3) 		223
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 82.5
(-1.1)
P 		70.1
(-3)
P 		110.3
(3)
P 		88.8
(-0.2)
P 		40
B 106.6
(-0.5)
P 		85.6
(-2.4)
P 		78.7
(-3)
P 		145.1
(3)
P 		66
C 124.1
(0.5)
P 		100
(-3)
P 		141.8
(3)
P 		107
(-2)
P 		42
avr 104.4
(1.1) 		85.2
(-3) 		110.3
(2.3) 		113.6
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 83.8
(-0.5)
P 		104.2
(1.3)
P 		55
(-3)
P 		92.6
(0.3)
P 		103.6
(1.3)
P 		123.5
(3)
P 		69
B 146.1
(0.3)
P 		80
(-2.3)
P 		62.5
(-3)
P 		80.9
(-2.3)
P 		96.2
(-1.7)
P 		214.3
(3)
P 		152
C 142.8
(1.7)
P 		114.6
(0.1)
P 		112.1
(-0)
P 		59
(-3)
P 		116.1
(0.2)
P 		166.1
(3)
P 		107
avr 124.2
(0.1) 		99.6
(-1.5) 		76.5
(-3) 		77.5
(-2.9) 		105.3
(-1.1) 		168
(3) 		92
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191580_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10087
Sequence Type Exemplar sequence
Representative Public ID F11A10.1 NCBI
Target Description F11A10.1 /REP_DB=WormBase Gene ID /WP=CE20665 /TR=SW:P54816 /GB=CAA92684.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=TAT-binding homolog like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069888(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069888 NCBI Caenorhabditis elegans F11A10.1 (F11A10.1) mRNA, complete cds. 11/11 None
SNAP00000006200 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12082530:12083986:1 11/11 None
GENEFINDER00000006217 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12080583:12083986:1 11/11 None
F11A10.1 ENSEMBL cdna:known chromosome:CEL140:IV:12079444:12084325:1 gene:F11A10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12079451-12083992(+) 98.1 100.0
Public Domain and Genome References
Gene Title TAT-binding homolog like
Gene Symbol lex-1
Ensembl F11A10.1
Entrez Gene 178146 Entrez gene
SwissProt P54816 EMBL-EBI
WormBase CE20665 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:261257_AT cell division cycle protein 48-related / CDC48-related at
CANINE_2:CFA.19920.1.S1_S_AT similar to two AAA domain containing protein cfa
CANINE_2:CFAAFFX.2390.1.S1_AT similar to two AAA domain containing protein cfa
CHICKEN:GGAAFFX.10484.1.S1_AT similar to two AAA domain containing protein; PRO2000 protein gga
HG-U133_PLUS_2:218782_S_AT ATPase family, AAA domain containing 2 hs
HG-U133A:218782_S_AT ATPase family, AAA domain containing 2 hs
HG-U133A_2:218782_S_AT ATPase family, AAA domain containing 2 hs
HU35KSUBA:AA235448_S_AT ATPase family, AAA domain containing 2 hs
HU35KSUBA:HUM_ALU_AT ATPase family, AAA domain containing 2 hs
HU35KSUBB:HUM_ALU_AT ATPase family, AAA domain containing 2 hs
HU35KSUBC:HUM_ALU_AT ATPase family, AAA domain containing 2 hs
HU35KSUBD:HUM_ALU_AT ATPase family, AAA domain containing 2 hs
HUGENEFL:HUM_ALU_AT ATPase family, AAA domain containing 2 hs
HC-G110:HUM_ALU_AT ATPase family, AAA domain containing 2 hs
HU35KSUBB:RC_H58234_AT ATPase family, AAA domain containing 2 hs
HU35KSUBC:RC_N47113_AT ATPase family, AAA domain containing 2 hs
U133_X3P:G7662630_3P_A_AT ATPase family, AAA domain containing 2 hs
U133_X3P:HS.222088.0.A1_3P_AT ATPase family, AAA domain containing 2 hs
HG-U133_PLUS_2:222740_AT ATPase family, AAA domain containing 2 hs
HG-U133B:222740_AT ATPase family, AAA domain containing 2 hs
HG-U133_PLUS_2:235266_AT ATPase family, AAA domain containing 2 hs
HG-U133B:235266_AT ATPase family, AAA domain containing 2 hs
HG-U95C:61977_S_AT ATPase family, AAA domain containing 2 hs
HG-U95C:61978_AT ATPase family, AAA domain containing 2 hs
HG-U95C:62155_R_AT ATPase family, AAA domain containing 2 hs
HG-U95E:87339_AT ATPase family, AAA domain containing 2 hs
HG-U133_PLUS_2:228401_AT ATPase family, AAA domain containing 2 hs
HG-U133B:228401_AT ATPase family, AAA domain containing 2 hs
HG-U95B:58354_AT ATPase family, AAA domain containing 2 hs
HU35KSUBB:RC_T87807_S_AT ATPase family, AAA domain containing 2 hs
HU35KSUBD:RC_AA287933_AT ATPase family, AAA domain containing 2 hs
HU35KSUBD:RC_AA450252_AT ATPase family, AAA domain containing 2 hs
U133_X3P:HS.167771.0.A1_3P_AT ATPase family, AAA domain containing 2 hs
MU11KSUBA:C79507_RC_F_AT ATPase family, AAA domain containing 2 mm
MG-U74CV2:140006_AT ATPase family, AAA domain containing 2 mm
MG-U74BV2:164197_AT ATPase family, AAA domain containing 2 mm
MOE430B:1436174_AT ATPase family, AAA domain containing 2 mm
MOUSE430_2:1436174_AT ATPase family, AAA domain containing 2 mm
MOE430B:1443229_AT ATPase family, AAA domain containing 2 mm
MOUSE430_2:1443229_AT ATPase family, AAA domain containing 2 mm
MOE430B:1443146_AT ATPase family, AAA domain containing 2 mm
MOUSE430_2:1443146_AT ATPase family, AAA domain containing 2 mm
MG-U74CV2:167812_AT ATPase family, AAA domain containing 2 mm
MU19KSUBB:TC26404_AT ATPase family, AAA domain containing 2 (Atad2), transcript variant 2, mRNA mm
MU19KSUBB:TC26404_G_AT ATPase family, AAA domain containing 2 (Atad2), transcript variant 2, mRNA mm
RAE230B:1391651_AT ATPase family, AAA domain containing 2 (predicted) rn
RAT230_2:1391651_AT ATPase family, AAA domain containing 2 (predicted) rn
RAE230A:1376599_AT ATPase family, AAA domain containing 2 (predicted) rn
RAT230_2:1376599_AT ATPase family, AAA domain containing 2 (predicted) rn
RG-U34B:RC_AA801178_AT ATPase family, AAA domain containing 2 (predicted) rn
YEAST_2:1774772_AT Protein of unknown function, member of CDC48/PAS1/SEC18 family of ATPases, potentially phosphorylated by Cdc28p Sc
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92684 Hypothetical protein F11A10.1 [Caenorhabditis elegans] emb|CAA92596.1| Hypothetical protein F11A10.1 [Caenorhabditis elegans] ref|NP_502289.1| F11A10.1 [Caenorhabditis elegans] sp|P54816|TBP7_CAEEL TAT-binding homolog 0.0
blast AAZ73761 lin-48 expression abnormal protein [Caenorhabditis elegans] 0.0
blast CAE62175 Hypothetical protein CBG06222 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 7.3E-81
Pfam IPR001487 EMBL-EBI Bromodomain 1.6E-27
Pfam IPR001487 EMBL-EBI Bromodomain 1.3E-24
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 7.3E-81
Pfam IPR001487 EMBL-EBI Bromodomain 1.6E-27
Sequence
Target Sequence 
>C. ELEGANS:191580_S_AT
aagcttggtgtagctgctccaacattggaactcgttgttgtccctgtagaagatatgaaa
agtgaagaaggaacgagcacatcaactgatggagttccagcttctgctggaaataaaaag
aaattgctcaaaaagaagaagggtcaaaagaaaagcaaaaccggcgaatctgaagagcac
gatgaagatagtacagttgaagacgcaggagaagatacaattgtagaaaatcttgaaatc
aagaaaaatcaggaaactccaaacagtgaacatgatatcgagatgaaagatgcttctaaa
gattctacaccttccgtgcaaatttcgattgctgagaaagaattgatagtttcgaagcca
gcaacatgcgagctgattcagtgttgtgtcgaaaagtcggagggttggtcagtcagcgag
ttggaacgtttgtcttctgttctatcacatacaattgaacgattccgggacgaatggaac
cgcgaaaatctaccagcccaacttacccaaattgtacgtgaatggcaaacagctgacgat
tcgaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCTTGGTGTAGCTGCTCCAACAT 200 151 3136 Antisense
CATTGGAACTCGTTGTTGTCCCTGT 68 219 3158 Antisense
ACTGATGGAGTTCCAGCTTCTGCTG 579 97 3220 Antisense
AGATTCTACACCTTCCGTGCAAATT 460 65 3435 Antisense
GTTTCGAAGCCAGCAACATGCGAGC 659 447 3484 Antisense
AAAGTCGGAGGGTTGGTCAGTCAGC 16 123 3528 Antisense
GTCAGCGAGTTGGAACGTTTGTCTT 327 465 3547 Antisense
GTTTGTCTTCTGTTCTATCACATAC 95 453 3563 Antisense
TGGAACCGCGAAAATCTACCAGCCC 626 545 3610 Antisense
CAGCCCAACTTACCCAAATTGTACG 184 203 3629 Antisense
ATGGCAAACAGCTGACGATTCGAAC 415 53 3657 Antisense
Sequence Source Affymetrix Proprietary Database