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[191579_at] Sodium and potassium ATPases

Description C43F9.6 /REP_DB=WormBase Gene ID /WP=CE19734 /TR=Q9XUG9 /GB=CAB05149.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Sodium and potassium ATPases
Cluster 6grp_total > 87      4grp_total > 34      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 10.5
(-2.6)
A 		48.4
(3)
A 		8
(-3)
A 		22.3
(-0.9)
A 		40
B 36.1
(1.3)
A 		48.2
(3)
A 		34
(1)
A 		4.8
(-3)
A 		43
C 5.4
(-3)
A 		14.9
(-2.3)
A 		34.1
(-0.8)
A 		84.9
(3)
A 		80
avr 17.3
(-3) 		37.2
(3) 		25.4
(-0.6) 		37.3
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 362
1 2 3 4 5 6 range
A 50.4
(-2.4)
A 		23.2
(-2.9)
A 		15.1
(-3)
A 		60.6
(-2.2)
A 		198.7
(0.2)
P 		364.2
(3)
P 		349
B 29.9
(-2.4)
A 		28.1
(-2.5)
A 		9
(-3)
A 		71
(-1.3)
A 		137.4
(0.5)
P 		228
(3)
P 		219
C 24.6
(-2.6)
A 		16.6
(-2.7)
A 		2.7
(-3)
A 		42.9
(-2.3)
A 		122.9
(-0.8)
P 		331.9
(3)
P 		329
avr 35
(-2.5) 		22.6
(-2.7) 		8.9
(-3) 		58.2
(-2) 		153
(-0.1) 		308
(3) 		299
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 3.8
(-1.8)
A 		10.5
(3)
A 		2.1
(-3)
A 		3.3
(-2.1)
A 		8
B 11.5
(2.8)
A 		11.9
(3)
A 		7.9
(0.8)
A 		1
(-3)
A 		11
C 1.8
(-3)
A 		4.3
(-1.8)
A 		11.9
(1.8)
A 		14.3
(3)
A 		13
avr 5.7
(-3) 		8.9
(3) 		7.3
(-0) 		6.2
(-2.1) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 9.3
(-2.6)
A 		8.2
(-2.7)
A 		3.3
(-3)
A 		15.4
(-2.1)
A 		60
(1)
P 		88.7
(3)
P 		85
B 10.4
(-2.4)
A 		9.3
(-2.5)
A 		2.2
(-3)
A 		18.8
(-1.8)
A 		55.8
(0.9)
P 		85
(3)
P 		83
C 9.1
(-2.5)
A 		5.1
(-2.8)
A 		0.7
(-3)
A 		8.6
(-2.6)
A 		39.8
(-0.9)
P 		111.1
(3)
P 		110
avr 9.6
(-2.5) 		7.5
(-2.7) 		2.1
(-3) 		14.3
(-2.2) 		51.9
(0.2) 		94.9
(3) 		93
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191579_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9487
Sequence Type Exemplar sequence
Representative Public ID C43F9.6 NCBI
Target Description C43F9.6 /REP_DB=WormBase Gene ID /WP=CE19734 /TR=Q9XUG9 /GB=CAB05149.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Sodium and potassium ATPases
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069557(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069557 NCBI Caenorhabditis elegans C43F9.6 (C43F9.6) mRNA, complete cds. 11/11 None
SNAP00000019773 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10591769:10592950:1 11/11 None
GENEFINDER00000019781 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10590929:10592950:1 11/11 None
C43F9.6 ENSEMBL cdna:known chromosome:CEL140:IV:10590920:10592951:1 gene:C43F9.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10590934-10592956(+) 100.0 100.0
Public Domain and Genome References
Gene Title Sodium and potassium ATPases
Ensembl C43F9.6
Entrez Gene 177950 Entrez gene
SwissProt Q9XUG9 EMBL-EBI
WormBase CE19734 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6813 potassium ion transport inferred from electronic annotation QuickGO AmiGO
6814 sodium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5391 sodium:potassium-exchanging ATPase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05149 Hypothetical protein C43F9.6 [Caenorhabditis elegans] ref|NP_501958.1| C43F9.6 [Caenorhabditis elegans] 0.0
blast CAB05149 Hypothetical protein C43F9.6 [Caenorhabditis elegans] ref|NP_501958.1| C43F9.6 [Caenorhabditis elegans] 1.0E-170
blast CAE60754 Hypothetical protein CBG04440 [Caenorhabditis briggsae] 1.0E-134
blast CAE60754 Hypothetical protein CBG04440 [Caenorhabditis briggsae] 1.0E-117
blast CAB02752 Hypothetical protein C17E4.9 [Caenorhabditis elegans] ref|NP_492506.1| C17E4.9 [Caenorhabditis elegans] 5.0E-19
blast CAB02752 Hypothetical protein C17E4.9 [Caenorhabditis elegans] ref|NP_492506.1| C17E4.9 [Caenorhabditis elegans] 7.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR000402 EMBL-EBI Na+/K+ ATPase, beta subunit 5.5E-15
Pfam IPR000402 EMBL-EBI Na+/K+ ATPase, beta subunit 5.5E-15
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501958.1 1 104-126
C43F9.6 1 104-126
SNAP00000019773 1 15-37
GENEFINDER00000019781 1 104-126
Sequence
Target Sequence 
>C. ELEGANS:191579_AT
gaatgcacactttcgctagacaatttggagcgtggatttggatacagtaaaggacagccg
tgtatcatgttgaagctgaataagattgtcggatgggtgccaaacttgtctccttcgaaa
aataaaaccaaatgcccctctggagatttgtgttgtggccaaggaatcaaatttaaatgt
acttcgaatgctgacgtcaaatttgaatatttccctaaaactggaatccctacttgttac
ttcccatatgccaatcaaggaggttacgaacagccctatcaaatggtcaaattgacaaac
atcactgttaatagagagactactatcgaatgtgctcctgaagattcttcgctgaacaca
ctcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGCACACTTTCGCTAGACAATT 440 331 700 Antisense
GGACAGCCGTGTATCATGTTGAAGC 90 527 751 Antisense
GTCGGATGGGTGCCAAACTTGTCTC 682 471 787 Antisense
GCCAAACTTGTCTCCTTCGAAAAAT 710 273 798 Antisense
AAAACCAAATGCCCCTCTGGAGATT 483 131 823 Antisense
AATGTACTTCGAATGCTGACGTCAA 4 165 875 Antisense
TGGAATCCCTACTTGTTACTTCCCA 627 545 921 Antisense
GTTACTTCCCATATGCCAATCAAGG 611 445 935 Antisense
GGAGGTTACGAACAGCCCTATCAAA 492 485 958 Antisense
GACTACTATCGAATGTGCTCCTGAA 295 373 1017 Antisense
GAAGATTCTTCGCTGAACACACTCG 459 337 1039 Antisense
Sequence Source Affymetrix Proprietary Database