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[191577_at] 7TM chemoreceptor, str family

Description F59E11.14 /REP_DB=WormBase Gene ID /WP=CE25029 /GEN=str-86 /TR=Q9GUE3 /GB=AAG24151.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 4grp_high_8_8 > 22      6grp_total > 35      4grp_total > 10      6grp_cgc > 35      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 30.9
(-3)
P 		72.8
(-0)
A 		76.8
(0.3)
P 		114.8
(3)
P 		84
B 66.8
(0.6)
P 		63
(0.1)
M 		35.6
(-3)
A 		87.9
(3)
P 		52
C 73.4
(-1.8)
M 		63.1
(-2.5)
P 		56.8
(-3)
P 		139.8
(3)
P 		83
avr 57
(-2.9) 		66.3
(-2) 		56.4
(-3) 		114.2
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 81.4
(3)
P 		43.4
(-0.6)
A 		55.9
(0.6)
A 		31.8
(-1.7)
A 		17.9
(-3)
A 		80.9
(3)
A 		64
B 79
(3)
A 		74.4
(2.3)
P 		69.5
(1.6)
A 		41.3
(-2.5)
A 		40
(-2.7)
P 		37.8
(-3)
A 		41
C 28
(-3)
A 		71.5
(1.1)
P 		62.1
(0.2)
A 		92.2
(3)
A 		32.2
(-2.6)
A 		40.8
(-1.8)
A 		64
avr 62.8
(2.9) 		63.1
(3) 		62.5
(2.9) 		55.1
(1.5) 		30
(-3) 		53.2
(1.2) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 11.3
(-3)
P 		15.8
(0.1)
A 		20.1
(3)
P 		16.8
(0.8)
P 		9
B 21.3
(3)
P 		15.6
(0.4)
M 		8.3
(-3)
A 		18.7
(1.8)
P 		13
C 24.3
(3)
M 		18.1
(-3)
P 		19.8
(-1.4)
P 		23.6
(2.3)
P 		6
avr 19
(1.8) 		16.5
(-2.3) 		16.1
(-3) 		19.7
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 15
(1)
P 		15.4
(1.2)
A 		12.2
(-0.1)
A 		8.1
(-1.9)
A 		5.4
(-3)
A 		19.7
(3)
A 		14
B 27.5
(3)
A 		24.8
(2)
P 		16.9
(-0.8)
A 		10.9
(-3)
A 		16.2
(-1.1)
P 		14.1
(-1.8)
A 		17
C 10.4
(-3)
A 		21.8
(3)
P 		15.8
(-0.2)
A 		18.5
(1.3)
A 		10.4
(-3)
A 		13.6
(-1.3)
A 		11
avr 17.6
(1.1) 		20.7
(3) 		15
(-0.4) 		12.5
(-1.9) 		10.7
(-3) 		15.8
(0.1) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191577_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12255
Sequence Type Exemplar sequence
Representative Public ID F59E11.14 NCBI
Target Description F59E11.14 /REP_DB=WormBase Gene ID /WP=CE25029 /GEN=str-86 /TR=Q9GUE3 /GB=AAG24151.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072919(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072919 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-86) (str-86) mRNA, complete cds. 11/11 None
GENEFINDER00000037886 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8984973:8986212:-1 11/11 None
F59E11.14 ENSEMBL cdna:known chromosome:CEL140:V:8984973:8986275:-1 gene:F59E11.14 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037879 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8984973-8986276(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-86
Ensembl F59E11.14
Entrez Gene 191993 Entrez gene
SwissProt Q9GUE3 EMBL-EBI
WormBase CE25029 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24151 Seven tm receptor protein 86 [Caenorhabditis elegans] ref|NP_505320.1| Seven TM Receptor family member (str-86) [Caenorhabditis elegans] 0.0
blast T32117 hypothetical protein F59E11.14 - Caenorhabditis elegans 1.0E-166
blast AAG24150 Seven tm receptor protein 85 [Caenorhabditis elegans] ref|NP_505321.1| Seven TM Receptor family member (str-85) [Caenorhabditis elegans] 1.0E-129
blast AAG24150 Seven tm receptor protein 85 [Caenorhabditis elegans] ref|NP_505321.1| Seven TM Receptor family member (str-85) [Caenorhabditis elegans] 1.0E-122
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 6.6E-20
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 6.6E-20
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505320.1 7 10-29,41-63,83-105,126-148,198-220,246-268,283-302
F59E11.14 7 10-29,41-63,83-105,126-148,198-220,246-268,283-302
GENEFINDER00000037886 6 20-42,62-84,105-127,177-199,225-247,262-281
Sequence
Target Sequence 
>C. ELEGANS:191577_AT
gggtcagcagcttgtggggtatcaatgtgcatacttaaattcttcgcattccccgagacc
gaacgccgatcaatcgagcttagcgaggagttctctctatactataacttgacaatggac
caagttgtatataatggaccaaattattacatttgtaatgaaaatgatgaatgtgagatg
ccattgaaggactggactgcaatgatgattctaagtaatggattgattttctcaatcgtc
ataatgttgtactgtggataccgttgttgtgtgaaactgaataagaatgataagcagaca
agctgccgaactgttgatcttcaaaaacagttgatgattgctttaattattcaatctgtc
atcccaataatcttcatgtacattccaatacttttgctcttcattaccccaatgttcaag
attgggttgggaccatatgttaatattgccatggcaacactttcaatctatcctccaatt
gatcagttcgcaatcatctacgtcatcaaagattttagaattggtgtgaaagattttttc
aaatgtggaaaaaaatcagacaatacgtcctcttcaacaatcttcactacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTCAGCAGCTTGTGGGGTATCAA 93 497 412 Antisense
TACTTAAATTCTTCGCATTCCCCGA 317 641 443 Antisense
GAGACCGAACGCCGATCAATCGAGC 2 395 466 Antisense
GAGCTTAGCGAGGAGTTCTCTCTAT 170 389 487 Antisense
CAAGCTGCCGAACTGTTGATCTTCA 545 185 710 Antisense
CAATCTGTCATCCCAATAATCTTCA 499 181 763 Antisense
GCTCTTCATTACCCCAATGTTCAAG 270 299 807 Antisense
TGGCAACACTTTCAATCTATCCTCC 153 547 863 Antisense
ATCAGTTCGCAATCATCTACGTCAT 414 29 893 Antisense
AATCAGACAATACGTCCTCTTCAAC 471 171 965 Antisense
TCCTCTTCAACAATCTTCACTACAA 686 591 979 Antisense
Sequence Source Affymetrix Proprietary Database