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[191576_at] sodium/phosphate transporter

Description C39E9.7 /REP_DB=WormBase Gene ID /WP=CE05390 /TR=Q18544 /GB=CAA94336.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=sodium-phosphate transporter
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 27      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 80      6grp_total > 16      4grp_total > 30      6grp_highest_sub > De      6grp_high1_sub > Cu      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 218
1 2 3 4 range
A 505.8
(0.8)
P 		402.3
(-3)
P 		413.2
(-2.6)
P 		567.5
(3)
P 		165
B 497.7
(3)
P 		376.1
(-1.9)
P 		363.9
(-2.4)
P 		349.4
(-3)
P 		148
C 534.2
(3)
P 		458.9
(-0.4)
P 		402.6
(-3)
P 		512.4
(2)
P 		132
avr 512.6
(3) 		412.4
(-2) 		393.2
(-3) 		476.4
(1.2) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 374
1 2 3 4 5 6 range
A 463
(3)
P 		260.1
(-0.3)
P 		168.5
(-1.7)
P 		88.8
(-3)
P 		137.4
(-2.2)
P 		177.7
(-1.6)
P 		374
B 358.3
(3)
P 		260.7
(0.6)
P 		154.4
(-2)
P 		183.9
(-1.2)
P 		111.4
(-3)
P 		186.8
(-1.2)
P 		247
C 254
(1.9)
P 		284
(3)
P 		148.5
(-1.8)
P 		200.6
(0)
P 		115.2
(-3)
P 		139.9
(-2.1)
P 		169
avr 358.4
(3) 		268.3
(0.7) 		157.1
(-2.1) 		157.8
(-2.1) 		121.3
(-3) 		168.1
(-1.8) 		237
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 184.1
(3)
P 		87.3
(-2.8)
P 		108
(-1.5)
P 		83.1
(-3)
P 		101
B 158.7
(3)
P 		92.9
(-1.7)
P 		84.3
(-2.3)
P 		74.5
(-3)
P 		84
C 176.8
(3)
P 		131.9
(0)
P 		140.3
(0.6)
P 		86.4
(-3)
P 		90
avr 173.2
(3) 		104
(-1.5) 		110.9
(-1.1) 		81.3
(-3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 85.4
(2.4)
P 		92.5
(3)
P 		36.7
(-1.8)
P 		22.5
(-3)
P 		41.5
(-1.4)
P 		43.3
(-1.2)
P 		70
B 124.7
(3)
P 		86.8
(0.4)
P 		37.5
(-3)
P 		48.7
(-2.2)
P 		45.3
(-2.5)
P 		69.7
(-0.8)
P 		87
C 94.1
(3)
P 		86.7
(2.2)
P 		37.8
(-2.9)
P 		40.3
(-2.7)
P 		37.3
(-3)
P 		46.8
(-2)
P 		57
avr 101.4
(3) 		88.7
(1.8) 		37.3
(-3) 		37.2
(-3) 		41.4
(-2.6) 		53.3
(-1.5) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191576_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8579
Sequence Type Exemplar sequence
Representative Public ID C39E9.7 NCBI
Target Description C39E9.7 /REP_DB=WormBase Gene ID /WP=CE05390 /TR=Q18544 /GB=CAA94336.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=sodium-phosphate transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070110(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070110 NCBI Caenorhabditis elegans C39E9.7 (C39E9.7) mRNA, complete cds. 11/11 None
GENEFINDER00000026321 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13072669:13076540:-1 11/11 None
C39E9.7 ENSEMBL cdna:known chromosome:CEL140:IV:13072669:13076710:-1 gene:C39E9.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026302 6/11 Cross Hyb Matching Probes None
SNAP00000026306 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13072674-13076716(-) 100.0 100.0
Public Domain and Genome References
Gene Title sodium/phosphate transporter
Ensembl C39E9.7
Entrez Gene 183346 Entrez gene
SwissProt Q18544 EMBL-EBI
WormBase CE35427 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94336 Hypothetical protein C39E9.7 [Caenorhabditis elegans] ref|NP_502511.2| C39E9.7 [Caenorhabditis elegans] 0.0
blast CAE58664 Hypothetical protein CBG01833 [Caenorhabditis briggsae] 0.0
blast AAC17018 Hypothetical protein H11E01.2 [Caenorhabditis elegans] ref|NP_508300.2| H11E01.2 [Caenorhabditis elegans] 4.0E-23
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502511.2 12 61-83,134-156,163-181,185-207,219-241,251-273,315-337,352-374,387-409,413-434,447-469,479-501
C39E9.7 12 61-83,134-156,163-181,185-207,219-241,251-273,315-337,352-374,387-409,413-434,447-469,479-501
GENEFINDER00000026321 12 28-50,101-123,130-148,152-174,186-208,218-240,282-304,319-341,354-376,380-401,414-436,446-468
Sequence
Target Sequence 
>C. ELEGANS:191576_AT
aacattcgatctccggattccatatttatcaatctaccaggacttccgtatctgggtgat
attcttcacctcatttgcctatggatgtgccctccaacttttctaccaatttggcccaac
attcttccacaaagtcctaggtcactcagaaatctcatctgcctacttcacaattattgc
tccgatcctcaacttggtcacttcatgctcgtcggtaatgtacatcctggcctcatccct
tctcggatgctcatatgcaggccatttgagaatgaaccagctccgatccggccaccttca
tctatttctgctcgtcaatatttttattgtcaactcgactgcaatgttcttctcatcatt
actcaacgttctcattgcaaaaaacactgactactcatcctggtcaactctgttcatagt
tcacgcgatattcctcatcatcgccaacatcattttcttctttttctgctcctcagaaag
agcaccatgggccaaggaaggctacgaggactcttcgattcagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACATTCGATCTCCGGATTCCATAT 171 139 909 Antisense
TTCTTCACCTCATTTGCCTATGGAT 195 691 970 Antisense
TTGGCCCAACATTCTTCCACAAAGT 447 709 1019 Antisense
TTCACAATTATTGCTCCGATCCTCA 628 685 1075 Antisense
GCTCGTCGGTAATGTACATCCTGGC 453 297 1115 Antisense
AACTCGACTGCAATGTTCTTCTCAT 472 141 1240 Antisense
TTCTTCTCATCATTACTCAACGTTC 203 691 1255 Antisense
AAAACACTGACTACTCATCCTGGTC 657 129 1289 Antisense
CATCCTGGTCAACTCTGTTCATAGT 564 211 1304 Antisense
ATAGTTCACGCGATATTCCTCATCA 72 23 1324 Antisense
GGCTACGAGGACTCTTCGATTCAGC 346 537 1408 Antisense
Sequence Source Affymetrix Proprietary Database