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[191573_s_at] ATP synthase beta chain

Description C34E10.6 /REP_DB=WormBase Gene ID /WP=CE01186 /TR=SW:P46561 /GB=AAA19068.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=ATP synthase beta chain
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 21      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 08      6grp_total > 32      4grp_total > 59      6grp_highest_sub > De      6grp_cgc > 70      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12787
1 2 3 4 range
A 20416.1
(0.7)
P 		22760
(3)
P 		22632.6
(2.9)
P 		16516.7
(-3)
P 		6243
B 20347.6
(0.7)
P 		24431.6
(3)
P 		23466.8
(2.5)
P 		13842.3
(-3)
P 		10589
C 18658
(2)
P 		20021.2
(3)
P 		19562.3
(2.7)
P 		11645.1
(-3)
P 		8376
avr 19807.2
(1.1) 		22404.3
(3) 		21887.2
(2.6) 		14001.4
(-3) 		8403

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13092
1 2 3 4 5 6 range
A 24019.3
(3)
P 		19769.8
(-0.3)
P 		21064.8
(0.7)
P 		18998.8
(-0.9)
P 		16470.4
(-2.9)
P 		16294
(-3)
P 		7725
B 20135.1
(1)
P 		19608.8
(0.7)
P 		24452.6
(3)
P 		19350.3
(0.6)
P 		14599.8
(-1.6)
P 		11717.9
(-3)
P 		12735
C 19225.6
(1.3)
P 		20341
(1.9)
P 		22264.4
(3)
P 		17204.4
(0.2)
P 		17738.4
(0.5)
P 		11361.1
(-3)
P 		10903
avr 21126.7
(2.1) 		19906.5
(1.3) 		22593.9
(3) 		18517.8
(0.4) 		16269.5
(-1) 		13124.3
(-3) 		9470
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5470
1 2 3 4 range
A 7433.5
(3)
P 		4940.6
(0)
P 		5916.6
(1.2)
P 		2417.7
(-3)
P 		5016
B 6488.7
(3)
P 		6034
(2.2)
P 		5437.8
(1.2)
P 		2949.8
(-3)
P 		3539
C 6176.3
(2.2)
P 		5756.2
(1.7)
P 		6818.1
(3)
P 		1963.5
(-3)
P 		4855
avr 6699.5
(3) 		5576.9
(1.4) 		6057.5
(2.1) 		2443.7
(-3) 		4256

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3666
1 2 3 4 5 6 range
A 4427.8
(-2.1)
P 		7031.1
(3)
P 		4587.5
(-1.8)
P 		4818.5
(-1.3)
P 		4970
(-1)
P 		3967.1
(-3)
P 		3064
B 7006
(3)
P 		6526.9
(1.9)
P 		5937.8
(0.6)
P 		5125.2
(-1.3)
P 		5931.7
(0.6)
P 		4369.6
(-3)
P 		2636
C 7126.1
(3)
P 		6206.7
(1.5)
P 		5666.7
(0.6)
P 		3459.8
(-3)
P 		5739.9
(0.7)
P 		3803.2
(-2.4)
P 		3666
avr 6186.6
(2.1) 		6588.2
(3) 		5397.3
(0.2) 		4467.8
(-2) 		5547.2
(0.5) 		4046.6
(-3) 		2542
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191573_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7792
Sequence Type Exemplar sequence
Representative Public ID C34E10.6 NCBI
Target Description C34E10.6 /REP_DB=WormBase Gene ID /WP=CE01186 /TR=SW:P46561 /GB=AAA19068.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=ATP synthase beta chain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065710(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065710 NCBI Caenorhabditis elegans ATP synthase subunit family member (atp-2) (atp-2) mRNA, complete cds. 11/11 None
GENEFINDER00000034371 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5228094:5230192:1 11/11 None
SNAP00000034352 ENSEMBL cdna:SNAP chromosome:CEL140:III:5228374:5230192:1 11/11 None
C34E10.6.3 ENSEMBL cdna:known chromosome:CEL140:III:5228368:5230501:1 gene:C34E10.6 11/11 None
C34E10.6.2 ENSEMBL cdna:known chromosome:CEL140:III:5228372:5230501:1 gene:C34E10.6 11/11 None
C34E10.6.4 ENSEMBL cdna:known chromosome:CEL140:III:5228374:5230489:1 gene:C34E10.6 11/11 None
C34E10.6.1 ENSEMBL cdna:known chromosome:CEL140:III:5228374:5230501:1 gene:C34E10.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5228092-5230191(+) 100.0 100.0
Public Domain and Genome References
Gene Title ATP synthase beta chain
Gene Symbol atp-2
Ensembl C34E10.6
Entrez Gene 175716 Entrez gene
SwissProt P46561 EMBL-EBI
WormBase CE29950 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:245715_S_AT ATP synthase beta chain 1, mitochondrial at
CANINE:1589422_S_AT ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide cfa
CANINE_2:CFA.1251.1.S1_AT ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide cfa
CANINE_2:CFAAFFX.1181.1.S1_S_AT ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide cfa
DROSOPHILA_2:1633673_A_AT ATP synthase- dm
DROSOPHILA_2:1630984_AT ATP synthase- dm
DROSGENOME1:143586_AT ATP synthase- dm
CHICKEN:GGA.4809.1.S1_S_AT ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide gga
HG-U133_PLUS_2:201322_AT ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide hs
HG-U133A:201322_AT ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide hs
HG-U133A_2:201322_AT ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide hs
HG-FOCUS:201322_AT ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide hs
HUGENEFL:M19483_AT ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide hs
U133_X3P:G4502294_3P_AT ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide hs
HG-U95AV2:41357_AT ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide hs
MU11KSUBA:AF030559_AT ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit mm
MU11KSUBB:MSA.16991.0_F_AT ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit mm
MU11KSUBB:MSA.40668.0_F_AT ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit mm
MU11KSUBB:MSA.31336.0_F_AT ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit mm
MU11KSUBB:MSA.28302.0_F_AT ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit mm
MU11KSUBB:MSA.12621.0_F_AT ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit mm
MU11KSUBB:MSA.7019.0_F_AT ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit mm
MOE430A:1416829_AT ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit mm
MOUSE430A_2:1416829_AT ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit mm
MOUSE430_2:1416829_AT ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit mm
MU11KSUBB:MSA.33147.0_S_AT ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit, mRNA (cDNA clone IMAGE:4920887) mm
MU19KSUBA:TC22597_F_AT ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit, mRNA (cDNA clone IMAGE:4920887) mm
MU19KSUBC:TC36156_AT ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit, mRNA (cDNA clone IMAGE:4920887) mm
MU19KSUBC:TC38038_AT ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit, mRNA (cDNA clone IMAGE:4920887) mm
MU19KSUBC:TC39488_S_AT ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit, mRNA (cDNA clone IMAGE:4920887) mm
MU19KSUBC:TC40530_F_AT ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit, mRNA (cDNA clone IMAGE:4920887) mm
MU19KSUBC:TC40531_F_AT ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit, mRNA (cDNA clone IMAGE:4920887) mm
RG-U34A:RC_AI105050_AT ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide rn
RAE230A:1370275_AT ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide rn
RAT230_2:1370275_AT ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide rn
RAE230B:1380070_AT ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide rn
RAT230_2:1380070_AT ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide rn
YEAST_2:1770250_AT Beta subunit of the F1 sector of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6754 ATP biosynthesis inferred from electronic annotation QuickGO AmiGO
15986 ATP synthesis coupled proton transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
16469 proton-transporting two-sector ATPase complex inferred from electronic annotation QuickGO AmiGO
45255 hydrogen-translocating F-type ATPase complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
8553 hydrogen-exporting ATPase activity, phosphorylative mechanism inferred from electronic annotation QuickGO AmiGO
46933 hydrogen-transporting ATP synthase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
46961 hydrogen-transporting ATPase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA19068 Atp synthase subunit protein 2 [Caenorhabditis elegans] ref|NP_498111.2| ATP synthase subunit family member (atp-2) [Caenorhabditis elegans] sp|P46561|ATPB_CAEEL ATP synthase beta chain, mitochondrial precursor 0.0
blast T15763 hypothetical protein C34E10.6 - Caenorhabditis elegans 0.0
blast CAE73664 Hypothetical protein CBG21173 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004100 EMBL-EBI H+-transporting two-sector ATPase, alpha/beta subunit, N-terminal 7.8E-28
Pfam IPR000194 EMBL-EBI H+-transporting two-sector ATPase, alpha/beta subunit, central region 9.0E-83
Pfam IPR000793 EMBL-EBI H+-transporting two-sector ATPase, alpha/beta subunit, C-terminal 9.9E-51
Pfam IPR004100 EMBL-EBI H+-transporting two-sector ATPase, alpha/beta subunit, N-terminal 7.8E-28
Pfam IPR000194 EMBL-EBI H+-transporting two-sector ATPase, alpha/beta subunit, central region 9.0E-83
Pfam IPR000793 EMBL-EBI H+-transporting two-sector ATPase, alpha/beta subunit, C-terminal 9.9E-51
Pfam IPR004100 EMBL-EBI H+-transporting two-sector ATPase, alpha/beta subunit, N-terminal 7.8E-28
Pfam IPR000194 EMBL-EBI H+-transporting two-sector ATPase, alpha/beta subunit, central region 9.0E-83
Pfam IPR000793 EMBL-EBI H+-transporting two-sector ATPase, alpha/beta subunit, C-terminal 9.9E-51
Sequence
Target Sequence 
>C. ELEGANS:191573_S_AT
ccaacccttgccactgacatgggaagtatgcaagagagaattaccaccaccaagaaggga
tccatcacatccgtccaggctatttacgtacctgctgacgatttgactgatccagctcca
gctaccacattcgctcacttggacgccaccactgtcttgtcccgtggtattgccgaattg
gctatctacccagctgtcgatccacttgactccacctcccgtatcatggaccccaacgtt
gtcggacagaaccactacgacattgctcgtggagttcaaaagatcctccaagattacaag
tccctccaagatattattgctattcttggtatggatgagttgtccgaggaagacaagctt
accgtttcacgtgcccgcaagatccaacgtttcctttcccaaccattccaagtcgctgag
gtgttcactggacatcaaggaaagttcgtatcactcgaagagacaatccgcggtttcacc
atgattctcaagggagaactcgaccaccttccagaagttgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAACCCTTGCCACTGACATGGGAA 519 275 1132 Antisense
ATCCGTCCAGGCTATTTACGTACCT 680 1 1200 Antisense
TGACGATTTGACTGATCCAGCTCCA 202 571 1227 Antisense
CTTGTCCCGTGGTATTGCCGAATTG 468 217 1287 Antisense
GACAGAACCACTACGACATTGCTCG 8 369 1376 Antisense
CTCCAAGATTACAAGTCCCTCCAAG 658 233 1417 Antisense
AAGACAAGCTTACCGTTTCACGTGC 600 151 1481 Antisense
CCCAACCATTCCAAGTCGCTGAGGT 126 259 1529 Antisense
GTCGCTGAGGTGTTCACTGGACATC 545 473 1543 Antisense
CGAAGAGACAATCCGCGGTTTCACC 150 253 1587 Antisense
ACTCGACCACCTTCCAGAAGTTGCT 242 99 1629 Antisense
Sequence Source Affymetrix Proprietary Database