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[191571_s_at] sodium/phophate transporter

Description ZK682.2 /REP_DB=WormBase Gene ID /WP=CE07636 /TR=Q23576 /GB=AAA82415.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=sodium-phophate transporter
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 09      4grp_high_8_8 > 12      6grp_highest_nonorm > 61      6grp_total > 02      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 752
1 2 3 4 range
A 431.1
(-1.3)
P 		217
(-3)
A 		248.3
(-2.8)
P 		968.8
(3)
P 		752
B 389.6
(-0.7)
P 		333
(-1.8)
P 		269
(-3)
P 		580.2
(3)
P 		311
C 514.5
(-0.4)
P 		302.9
(-2.7)
P 		276.5
(-3)
P 		816.4
(3)
P 		540
avr 445.1
(-0.9) 		284.3
(-2.8) 		264.6
(-3) 		788.5
(3) 		524

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 410
1 2 3 4 5 6 range
A 556.6
(1.4)
P 		434.6
(-0.6)
P 		438.2
(-0.5)
P 		283.1
(-3)
P 		659.3
(3)
P 		424.2
(-0.7)
P 		376
B 567.1
(2.4)
P 		488.8
(0.9)
P 		292.5
(-3)
P 		596.6
(3)
P 		502.4
(1.1)
P 		452.1
(0.1)
P 		304
C 428.4
(-1.6)
P 		693.3
(3)
P 		429
(-1.6)
P 		573.6
(0.9)
P 		485.5
(-0.6)
P 		345.6
(-3)
P 		348
avr 517.4
(1.8) 		538.9
(2.6) 		386.6
(-3) 		484.4
(0.6) 		549.1
(3) 		407.3
(-2.2) 		163
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 156.9
(3)
P 		47.1
(-3)
A 		64.9
(-2)
P 		141.8
(2.2)
P 		110
B 124.3
(3)
P 		82.2
(-1.1)
P 		62.3
(-3)
P 		123.6
(2.9)
P 		62
C 170.3
(3)
P 		87.1
(-3)
P 		96.4
(-2.3)
P 		137.6
(0.6)
P 		83
avr 150.5
(3) 		72.1
(-3) 		74.5
(-2.8) 		134.3
(1.8) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 102.6
(-1.5)
P 		154.6
(0.9)
P 		95.4
(-1.9)
P 		71.8
(-3)
P 		198.9
(3)
P 		103.3
(-1.5)
P 		127
B 197.3
(2.7)
P 		162.7
(1.1)
P 		71
(-3)
P 		158
(0.9)
P 		204.1
(3)
P 		168.6
(1.4)
P 		133
C 158.8
(-0.1)
P 		211.6
(3)
P 		109.2
(-3)
P 		115.4
(-2.6)
P 		157.1
(-0.2)
P 		115.7
(-2.6)
P 		102
avr 152.9
(0.9) 		176.3
(2.3) 		91.9
(-3) 		115.1
(-1.5) 		186.7
(3) 		129.2
(-0.6) 		95
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191571_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11535
Sequence Type Exemplar sequence
Representative Public ID ZK682.2 NCBI
Target Description ZK682.2 /REP_DB=WormBase Gene ID /WP=CE07636 /TR=Q23576 /GB=AAA82415.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=sodium-phophate transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072998(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072998 NCBI Caenorhabditis elegans ZK682.2 (ZK682.2) mRNA, complete cds. 11/11 None
SNAP00000025480 ENSEMBL cdna:SNAP chromosome:CEL140:V:9266690:9269363:-1 11/11 None
GENEFINDER00000025488 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9266690:9269363:-1 11/11 None
ZK682.2.1 ENSEMBL cdna:known chromosome:CEL140:V:9266384:9269026:-1 gene:ZK682.2 11/11 None
ZK682.2.2 ENSEMBL cdna:known chromosome:CEL140:V:9266384:9269084:-1 gene:ZK682.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9266689-9268993(-) 100.0 100.0
Public Domain and Genome References
Gene Title sodium/phophate transporter
Ensembl ZK682.2
Entrez Gene 179308 Entrez gene
SwissProt Q23576 EMBL-EBI
WormBase CE07636 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA82415 Hypothetical protein ZK682.2 [Caenorhabditis elegans] ref|NP_505399.1| ZK682.2 [Caenorhabditis elegans] 0.0
blast CAE72145 Hypothetical protein CBG19243 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505399.1 12 13-35,94-116,123-142,152-174,186-205,215-237,278-300,315-334,354-376,380-399,412-434,449-471
ZK682.2.1 12 13-35,94-116,123-142,152-174,186-205,215-237,278-300,315-334,354-376,380-399,412-434,449-471
ZK682.2.2 12 13-35,94-116,123-142,152-174,186-205,215-237,278-300,315-334,354-376,380-399,412-434,449-471
SNAP00000025480 11 128-150,157-176,186-208,220-239,249-271,312-334,349-368,388-410,414-433,446-468,483-505
GENEFINDER00000025488 11 138-160,167-186,196-218,230-249,259-281,322-344,359-378,398-420,424-443,456-478,493-515
Sequence
Target Sequence 
>C. ELEGANS:191571_S_AT
acctatcttccactctactataaaactgtgttgaacatgagcttaacttcgaacggtctt
tggtctgctcttccatttgttcttcaattaatttcaaaagtgttctacgcaggaatggct
gaatccgcccgaaaacgagattggtcggatatcaatcggatcacaaagttctgtaattcg
agtgcttcatttggaatcgcaatttgctttggtcttctctgcctctgcgactgctcacaa
agaggcgctgcaatattcttgatatgtttagcaatgtgctttgtttctggatatattccc
ggttacaataccagcgccgtaaccattgctcctggtcaaacagctgcaattgctgcattc
tctcgattctggggacaaatcgcttcgtctgttgctccatatcatatcggagcatataca
aaacaaggaacagctgatgaatggaaaattgtgtttgcagtaattgccgcgatatgcgtt
gtcacaggaattttcttccaatgttgtggtacagccagtctacaagattgggattcaact
cattcaaaagctccaatcgaagttgcccgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCTATCTTCCACTCTACTATAAAA 691 87 904 Antisense
TAACTTCGAACGGTCTTTGGTCTGC 34 639 947 Antisense
GGAATGGCTGAATCCGCCCGAAAAC 259 533 1015 Antisense
CGCAATTTGCTTTGGTCTTCTCTGC 560 253 1101 Antisense
GCGACTGCTCACAAAGAGGCGCTGC 592 289 1130 Antisense
TTCCCGGTTACAATACCAGCGCCGT 408 697 1199 Antisense
CATTGCTCCTGGTCAAACAGCTGCA 448 215 1227 Antisense
TCTGGGGACAAATCGCTTCGTCTGT 306 607 1271 Antisense
TTCGTCTGTTGCTCCATATCATATC 235 695 1287 Antisense
ATTGCCGCGATATGCGTTGTCACAG 295 7 1366 Antisense
AAGCTCCAATCGAAGTTGCCCGAGA 318 149 1451 Antisense
Sequence Source Affymetrix Proprietary Database