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[191570_s_at] protein tyrosine phosphatase

Description F44G4.8 /REP_DB=WormBase Gene ID /WP=CE03335 /TR=Q20120 /GB=CAA90125.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=protein tyrosine phosphatase
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 14      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 21      6grp_total > 03      4grp_total > 46      6grp_cgc > 41      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1040
1 2 3 4 range
A 1815.4
(3)
P 		1047.1
(-2.9)
P 		1033.4
(-3)
P 		1289.5
(-1)
P 		782
B 2013.1
(3)
P 		1219.8
(-1.9)
P 		1032.7
(-3)
P 		1247.6
(-1.7)
P 		980
C 1789.8
(3)
P 		1352
(-0.2)
P 		1188.3
(-1.4)
P 		972.7
(-3)
P 		817
avr 1872.8
(3) 		1206.3
(-2.1) 		1084.8
(-3) 		1169.9
(-2.4) 		788

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1269
1 2 3 4 5 6 range
A 1548.9
(2.6)
P 		1603.3
(3)
P 		971.6
(-2.2)
P 		1262.1
(0.2)
P 		1257.6
(0.1)
P 		876.9
(-3)
P 		726
B 1613.4
(3)
P 		1580
(2.8)
P 		1001.6
(-1)
P 		1143.5
(-0.1)
P 		1210.9
(0.4)
P 		697.8
(-3)
P 		916
C 1903.7
(3)
P 		1305.4
(0.2)
P 		1111.5
(-0.7)
P 		1352.1
(0.4)
P 		1342.3
(0.3)
P 		635
(-3)
P 		1269
avr 1688.7
(3) 		1496.2
(1.8) 		1028.2
(-1.2) 		1252.6
(0.3) 		1270.3
(0.4) 		736.6
(-3) 		952
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 497
1 2 3 4 range
A 661
(3)
P 		227.3
(-2.5)
P 		270.1
(-2)
P 		188.8
(-3)
P 		472
B 642
(3)
P 		301.3
(-2.1)
P 		239.3
(-3)
P 		265.9
(-2.6)
P 		403
C 592.5
(3)
P 		388.7
(0.1)
P 		414.2
(0.5)
P 		164
(-3)
P 		429
avr 631.8
(3) 		305.8
(-1.6) 		307.9
(-1.6) 		206.2
(-3) 		426

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 494
1 2 3 4 5 6 range
A 285.5
(-1.8)
P 		570.2
(3)
P 		211.6
(-3)
P 		320.1
(-1.2)
P 		379.5
(-0.2)
P 		213.5
(-3)
P 		359
B 561.4
(3)
P 		525.9
(2.3)
P 		243.2
(-3)
P 		302.9
(-1.9)
P 		492
(1.7)
P 		260.2
(-2.7)
P 		318
C 705.6
(3)
P 		398.3
(-0.7)
P 		282.9
(-2.1)
P 		271.9
(-2.3)
P 		434.3
(-0.3)
P 		212.6
(-3)
P 		493
avr 517.5
(3) 		498.1
(2.6) 		245.9
(-2.6) 		298.3
(-1.6) 		435.3
(1.3) 		228.8
(-3) 		289
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191570_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3758
Sequence Type Exemplar sequence
Representative Public ID F44G4.8 NCBI
Target Description F44G4.8 /REP_DB=WormBase Gene ID /WP=CE03335 /TR=Q20120 /GB=CAA90125.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=protein tyrosine phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063524(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063524 NCBI Caenorhabditis elegans F44G4.8 (dep-1) mRNA, complete cds. 11/11 None
SNAP00000000995 ENSEMBL cdna:SNAP chromosome:CEL140:II:9006080:9008049:-1 11/11 None
GENEFINDER00000001001 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9006080:9013447:-1 11/11 None
F44G4.8 ENSEMBL cdna:known chromosome:CEL140:II:9005705:9019676:-1 gene:F44G4.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9006076-9019673(-) 100.0 100.0
Public Domain and Genome References
Gene Title protein tyrosine phosphatase
Gene Symbol dep-1
Ensembl F44G4.8
Entrez Gene 174437 Entrez gene
SwissProt Q20120 EMBL-EBI
WormBase CE03335 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1627599_AT Protein tyrosine phosphatase 4E dm
DROSGENOME1:151532_AT Protein tyrosine phosphatase 4E dm
DROSOPHILA_2:1637627_AT Protein tyrosine phosphatase 4E dm
DROSOPHILA_2:1631741_A_AT Protein tyrosine phosphatase 4E dm
DROSGENOME1:142338_AT Protein tyrosine phosphatase 4E dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4721 phosphoprotein phosphatase activity inferred from electronic annotation QuickGO AmiGO
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90958 Hypothetical protein F44G4.8 [Caenorhabditis elegans] emb|CAA90125.1| Hypothetical protein F44G4.8 [Caenorhabditis elegans] ref|NP_495925.1| F44G4.8 [Caenorhabditis elegans] 0.0
blast CAE59787 Hypothetical protein CBG03240 [Caenorhabditis briggsae] 0.0
blast AAA28952 receptor-linked protein tyrosine phosphatase 4.0E-88
blast AAA28952 receptor-linked protein tyrosine phosphatase 5.0E-88
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.3E-119
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.3E-119
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.0E-15
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.3E-119
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495925.1 1 901-923
F44G4.8 1 901-923
GENEFINDER00000001001 1 52-74
Sequence
Target Sequence 
>C. ELEGANS:191570_S_AT
gtgggagcagcagtgtccagcaattatagcactcacgaaatgtgttgaaaagggaagaga
taaatgtcatcaatattggcctgatcatgagaatgtacctgttttgtatggagatattga
agtgacaatagtagcagaaaaggaattcgatgaattcgtgatccgagatattcgacttga
aaaatcaggtcccgatggtcgcgtaacacgatttgtcaggcactggcattatatggcatg
gcctgattttggagccccgtctcatccaaacggtatcattcaattctcaagaatgttccg
tcaccatcttccacattcacctcataatgctccaacgatagtgcattgcagtgctggagt
tggtcgttctggaacatttatcagtattgatcgtctcctacaatcaagttcatttggtga
tccaattgatgtatttggaactgtttgtgaaatgcgatacgagagatgtcaaatggtaca
gaatgagcaacaatacatattcattcactattgtatccttcaagttctacaaggatcatc
tccgtctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGGAGCAGCAGTGTCCAGCAATT 351 489 3489 Antisense
GAAAAATCAGGTCCCGATGGTCGCG 160 355 3667 Antisense
GTAACACGATTTGTCAGGCACTGGC 547 461 3691 Antisense
TGGCATGGCCTGATTTTGGAGCCCC 284 545 3722 Antisense
CCCCGTCTCATCCAAACGGTATCAT 371 261 3743 Antisense
TCAAGAATGTTCCGTCACCATCTTC 202 631 3775 Antisense
CATCTTCCACATTCACCTCATAATG 494 213 3793 Antisense
CACCTCATAATGCTCCAACGATAGT 500 201 3806 Antisense
GATCGTCTCCTACAATCAAGTTCAT 427 417 3877 Antisense
TATTCATTCACTATTGTATCCTTCA 598 663 3986 Antisense
GTTCTACAAGGATCATCTCCGTCTC 423 443 4012 Antisense
Sequence Source Affymetrix Proprietary Database