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[191569_at] 7TM chemoreceptor, srh family

Description C31B8.11 /REP_DB=WormBase Gene ID /WP=CE26694 /GEN=srh-38 /TR=O16906 /GB=AAG23978.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemnoreceptor
Cluster 6grp_total > 44      4grp_total > 18      6grp_cgc > 45      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 137
1 2 3 4 range
A 4.1
(-3)
A 		32.8
(-1.2)
A 		3.3
(-3)
A 		101.3
(3)
P 		98
B 21.8
(-3)
A 		38.2
(-2.2)
A 		23.5
(-2.9)
A 		139.8
(3)
A 		118
C 26
(-2.2)
A 		58.1
(0.2)
A 		14.5
(-3)
A 		96.4
(3)
P 		82
avr 17.3
(-2.8) 		43
(-1.2) 		13.8
(-3) 		112.5
(3) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 28.2
(0.9)
A 		9.8
(-2)
A 		41.4
(3)
A 		4.5
(-2.9)
A 		3.7
(-3)
A 		8.8
(-2.2)
A 		38
B 2.8
(-3)
A 		32.8
(3)
A 		22
(0.8)
A 		14.8
(-0.6)
A 		3
(-3)
A 		17
(-0.2)
A 		30
C 6.6
(-2)
A 		25.5
(2.5)
A 		27.7
(3)
A 		4
(-2.7)
A 		2.6
(-3)
A 		16.9
(0.4)
A 		25
avr 12.5
(-0.9) 		22.7
(1.3) 		30.4
(3) 		7.8
(-2) 		3.1
(-3) 		14.2
(-0.6) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 1.5
(-2.7)
A 		7.1
(-0.3)
A 		0.9
(-3)
A 		14.8
(3)
P 		14
B 6.9
(-2.7)
A 		9.4
(-2)
A 		5.5
(-3)
A 		29.8
(3)
A 		24
C 8.6
(-1.2)
A 		16.7
(3)
A 		5.1
(-3)
A 		16.2
(2.7)
P 		12
avr 5.7
(-2.3) 		11.1
(-0.3) 		3.8
(-3) 		20.3
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 5.2
(0.1)
A 		3.5
(-1.2)
A 		9
(3)
A 		1.1
(-3)
A 		1.1
(-3)
A 		2.2
(-2.2)
A 		8
B 1
(-3)
A 		10.9
(3)
A 		5.4
(-0.3)
A 		3.9
(-1.2)
A 		1.2
(-2.9)
A 		6.3
(0.2)
A 		10
C 2.4
(-1.6)
A 		7.8
(3)
A 		7
(2.3)
A 		0.8
(-3)
A 		0.8
(-3)
A 		5.7
(1.2)
A 		7
avr 2.9
(-1.2) 		7.4
(3) 		7.1
(2.7) 		1.9
(-2.2) 		1
(-3) 		4.7
(0.5) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191569_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14930
Sequence Type Exemplar sequence
Representative Public ID C31B8.11 NCBI
Target Description C31B8.11 /REP_DB=WormBase Gene ID /WP=CE26694 /GEN=srh-38 /TR=O16906 /GB=AAG23978.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemnoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071392(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071392 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-38) (srh-38) mRNA, complete cds. 11/11 None
C31B8.11 ENSEMBL cdna:known chromosome:CEL140:V:2920427:2922521:-1 gene:C31B8.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000035081 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2920426-2924167(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-38
Ensembl C31B8.11
Entrez Gene 191857 Entrez gene
SwissProt O16906 EMBL-EBI
WormBase CE26694 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503793 Serpentine Receptor, class H family member (srh-38) [Caenorhabditis elegans] gb|AAG23978.2| Serpentine receptor, class h protein 38 [Caenorhabditis elegans] 0.0
blast T32171 hypothetical protein C31B8.11 - Caenorhabditis elegans 0.0
blast NP_503228 Serpentine Receptor, class H family member (srh-37) [Caenorhabditis elegans] gb|AAC69083.2| Serpentine receptor, class h protein 37 [Caenorhabditis elegans] 1.0E-168
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503793.1 6 15-37,49-71,102-124,137-159,203-225,250-272
C31B8.11 6 15-37,49-71,102-124,137-159,203-225,250-272
Sequence
Target Sequence 
>C. ELEGANS:191569_AT
atactgcgtagtttttgcgtttggcatgtgggctattcccatgataatttggcaattgcc
agatcaaaagtttgcaaaactaaatgtaatcaaaacccacgagttctatccggattgcat
ttgggactcgaacgttattgcaataacttccacggattctactgaagaggatgtaatttg
tgttttaatagtggcgaattgcgtttctatcggatttgcgatatttatttctgccaagat
tgcgttttacatgctctcgagaagaatgataaatcagtcagaggcaacgaaaaaaatgca
caagaaatttaacgagagaactattttacaagcaatactctacttcaccttctgctgtgt
cccattttcggtactttacctcactatactcttagaagttcacatcccagggagcacata
tttcattgatatcttttctgaaaaccatccgacagcttgtgcagtttccttatttttatt
ttatgatccatatcagtactatctgatggaacttcttgggattaaactccgccagaaaat
aagcaatgcgtcgactattctggtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATACTGCGTAGTTTTTGCGTTTGGC 573 23 516 Antisense
CAAAACCCACGAGTTCTATCCGGAT 700 187 606 Antisense
GCAATAACTTCCACGGATTCTACTG 571 321 655 Antisense
GAATTGCGTTTCTATCGGATTTGCG 531 323 711 Antisense
GGATTTGCGATATTTATTTCTGCCA 42 511 727 Antisense
GATTGCGTTTTACATGCTCTCGAGA 266 433 753 Antisense
GTACTTTACCTCACTATACTCTTAG 387 459 886 Antisense
TTAGAAGTTCACATCCCAGGGAGCA 593 681 907 Antisense
TGAAAACCATCCGACAGCTTGTGCA 560 571 954 Antisense
ACTTCTTGGGATTAAACTCCGCCAG 68 101 1026 Antisense
AAGCAATGCGTCGACTATTCTGGTT 168 151 1056 Antisense
Sequence Source Affymetrix Proprietary Database