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[191568_at] UDP-glucuronosyltransferase

Description C13D9.9 /REP_DB=WormBase Gene ID /WP=CE08142 /TR=O16243 /GB=AAB65311.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster 6grp_high1_10_10 > 51      4grp_high_8_8 > 30      6grp_total > 62      4grp_total > 33      6grp_cgc > 83      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 47.1
(-3)
P 		73.1
(1.5)
P 		81.7
(3)
P 		70.2
(1)
P 		35
B 43.1
(-3)
P 		71.9
(3)
P 		67.7
(2.1)
P 		53.2
(-0.9)
A 		29
C 63.6
(-1.9)
P 		59.5
(-3)
P 		65.2
(-1.4)
P 		81.5
(3)
P 		22
avr 51.3
(-3) 		68.2
(2) 		71.5
(3) 		68.3
(2) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 51.6
(-1.2)
A 		30.6
(-2.8)
A 		106.1
(3)
P 		88.4
(1.6)
P 		66.2
(-0.1)
P 		28.5
(-3)
A 		78
B 46.3
(-3)
P 		71.4
(0.4)
P 		63.6
(-0.6)
P 		90.1
(3)
P 		48.2
(-2.7)
P 		46.7
(-2.9)
A 		44
C 52.8
(-1.6)
P 		57.2
(-1.1)
P 		92.3
(3)
M 		63.5
(-0.3)
P 		54.6
(-1.4)
P 		40.5
(-3)
P 		52
avr 50.2
(-1.6) 		53.1
(-1.2) 		87.3
(3) 		80.7
(2.2) 		56.3
(-0.8) 		38.6
(-3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 17.2
(0.8)
P 		15.9
(0.1)
P 		21.3
(3)
P 		10.3
(-3)
P 		11
B 13.7
(-0.8)
P 		17.8
(3)
P 		15.7
(1.1)
P 		11.3
(-3)
A 		7
C 21
(1.9)
P 		17.1
(-0.7)
P 		22.7
(3)
P 		13.7
(-3)
P 		9
avr 17.3
(1.1) 		16.9
(0.8) 		19.9
(3) 		11.8
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 9.5
(-2)
A 		10.9
(-1.5)
A 		23.1
(3)
P 		22.4
(2.7)
P 		20
(1.9)
P 		6.9
(-3)
A 		16
B 16.1
(-2.6)
P 		23.8
(2.9)
P 		15.5
(-3)
P 		23.9
(3)
P 		19.6
(-0.1)
P 		17.4
(-1.6)
A 		8
C 19.6
(0.8)
P 		17.4
(-0.4)
P 		23.5
(3)
M 		12.8
(-3)
P 		17.7
(-0.3)
P 		13.6
(-2.6)
P 		11
avr 15.1
(-1.1) 		17.4
(0.6) 		20.7
(3) 		19.7
(2.3) 		19.1
(1.8) 		12.6
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191568_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15426
Sequence Type Exemplar sequence
Representative Public ID C13D9.9 NCBI
Target Description C13D9.9 /REP_DB=WormBase Gene ID /WP=CE08142 /TR=O16243 /GB=AAB65311.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071942(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071942 NCBI Caenorhabditis elegans C13D9.9 (UDP-glucuronosyltransferase) mRNA, complete cds. 10/11 None
SNAP00000031105 ENSEMBL cdna:SNAP chromosome:CEL140:V:4996861:5000275:-1 11/11 None
GENEFINDER00000031117 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4991318:5000371:-1 10/11 None
C13D9.9 ENSEMBL cdna:known chromosome:CEL140:V:4996861:5000371:-1 gene:C13D9.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4996860-5000371(-) 100.0 100.0
Public Domain and Genome References
Gene Title UDP-glucuronosyltransferase
Gene Symbol ugt-7
Ensembl C13D9.9
Entrez Gene 182577 Entrez gene
SwissProt O16243 EMBL-EBI
WormBase CE38484 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65311 Udp-glucuronosyltransferase protein 7 [Caenorhabditis elegans] ref|NP_504343.2| C13D9.9 [Caenorhabditis elegans] 0.0
blast CAE64042 Hypothetical protein CBG08640 [Caenorhabditis briggsae] 0.0
blast T03890 hypothetical protein C13D9.9 - Caenorhabditis elegans 0.0
blast AAB65309 Na/ca exchangers protein 9 [Caenorhabditis elegans] ref|NP_504342.1| Na/Ca eXchangers family member (ncx-9) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 5.9E-11
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 5.8E-13
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 2.5E-20
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 9.5E-10
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 2.5E-20
Pfam IPR004837 EMBL-EBI Sodium/calcium exchanger membrane region 1.9E-30
Pfam IPR004837 EMBL-EBI Sodium/calcium exchanger membrane region 7.8E-29
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.6E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504343.2 1 498-520
C13D9.9 3 400-422,443-465,562-584
SNAP00000031105 1 466-488
GENEFINDER00000031117 12 491-513,587-609,667-689,694-716,726-748,971-990,1000-1022,1031-1048,1058-1080,1101-1123,1138-1160,1167-1189
Sequence
Target Sequence 
>C. ELEGANS:191568_AT
ttatttccgattcacgtgtttccctgtttattactcatggcggtcttggaagtattatgg
aagttgcgtattctggaaaaccagcaattgtgattcccctatttttcgatcagccgatga
atggagaaatgcttcgaagacatggcggagccgaagtttattcgaaatttgaactttcaa
atgctaaaaaactgaagaaagttattcaaaatatgattcaaaatccaaaatatctggcga
acgccaaaaagctatccaatcttcttcaaaaacaaccaattaatccaatcgaacgacttg
tgaagcatgccgagtttgcagcagaattcaagaaacttcccgaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATTTCCGATTCACGTGTTTCCCT 623 675 1352 Antisense
CGTGTTTCCCTGTTTATTACTCATG 408 245 1366 Antisense
GTTTATTACTCATGGCGGTCTTGGA 71 449 1377 Antisense
GGAAGTTGCGTATTCTGGAAAACCA 566 531 1410 Antisense
AAACCAGCAATTGTGATTCCCCTAT 553 125 1429 Antisense
TTCCCCTATTTTTCGATCAGCCGAT 283 697 1445 Antisense
TGCTTCGAAGACATGGCGGAGCCGA 287 579 1481 Antisense
GCCAAAAAGCTATCCAATCTTCTTC 214 279 1594 Antisense
GAACGACTTGTGAAGCATGCCGAGT 399 347 1642 Antisense
GCATGCCGAGTTTGCAGCAGAATTC 45 311 1656 Antisense
GCAGAATTCAAGAAACTTCCCGAAC 14 311 1672 Antisense
Sequence Source Affymetrix Proprietary Database