[Home] | [Total List]

[191565_at] Protein-tyrosine phosphatase

Description F25H5.7 /REP_DB=WormBase Gene ID /WP=CE15903 /TR=O17840 /GB=CAB02988.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Protein-tyrosine phosphatase
Cluster 6grp_total > 77      4grp_total > 04      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 19.8
(-1.8)
A 		27.6
(-1.3)
A 		3
(-3)
A 		87.4
(3)
P 		84
B 41.3
(3)
A 		9.8
(-3)
A 		41.5
(3)
A 		32.6
(1.3)
A 		32
C 48.4
(-0.1)
M 		27.4
(-2)
A 		16.2
(-3)
A 		83.3
(3)
P 		67
avr 36.5
(-0.9) 		21.6
(-2.8) 		20.2
(-3) 		67.8
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 15.7
(-2.2)
A 		24.1
(-1.6)
A 		26.3
(-1.4)
A 		4.6
(-3)
A 		34.4
(-0.8)
A 		86.4
(3)
P 		82
B 16.3
(-2.9)
A 		15.4
(-3)
A 		43.2
(-0.9)
A 		19.7
(-2.7)
A 		61.3
(0.5)
M 		93.4
(3)
P 		78
C 12.9
(-3)
A 		28.7
(-2.1)
A 		25.1
(-2.3)
A 		20
(-2.6)
A 		29.1
(-2.1)
P 		118.6
(3)
P 		106
avr 15
(-3) 		22.7
(-2.4) 		31.5
(-1.8) 		14.8
(-3) 		41.6
(-1.1) 		99.5
(3) 		85
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 7.2
(0.2)
A 		6
(-0.4)
A 		0.8
(-3)
A 		12.8
(3)
P 		12
B 13.2
(3)
A 		2.4
(-3)
A 		9.6
(1)
A 		6.9
(-0.5)
A 		11
C 16
(3)
M 		7.9
(-1.7)
A 		5.7
(-3)
A 		14
(1.8)
P 		10
avr 12.1
(3) 		5.4
(-3) 		5.4
(-3) 		11.2
(2.2) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 2.9
(-2.5)
A 		8.6
(-0.8)
A 		5.7
(-1.6)
A 		1.2
(-3)
A 		10.4
(-0.2)
A 		21
(3)
P 		20
B 5.7
(-2.9)
A 		5.1
(-3)
A 		10.5
(-1.9)
A 		5.2
(-3)
A 		24.9
(1)
M 		34.8
(3)
P 		30
C 4.8
(-2.9)
A 		8.8
(-2.2)
A 		6.4
(-2.6)
A 		4
(-3)
A 		9.4
(-2.1)
P 		39.7
(3)
P 		36
avr 4.5
(-2.8) 		7.5
(-2.2) 		7.5
(-2.2) 		3.5
(-3) 		14.9
(-0.6) 		31.8
(3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191565_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2494
Sequence Type Exemplar sequence
Representative Public ID F25H5.7 NCBI
Target Description F25H5.7 /REP_DB=WormBase Gene ID /WP=CE15903 /TR=O17840 /GB=CAB02988.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Protein-tyrosine phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060053(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060053 NCBI Caenorhabditis elegans F25H5.7 (F25H5.7) mRNA, complete cds. 11/11 A 
SNAP00000024315 ENSEMBL cdna:SNAP chromosome:CEL140:I:9163686:9165535:1 11/11 None
GENEFINDER00000024326 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9163686:9165535:1 11/11 None
F25H5.7 ENSEMBL cdna:known chromosome:CEL140:I:9163663:9165535:1 gene:F25H5.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9163616-9165466(+) 90.63 100.0
Public Domain and Genome References
Gene Title Protein-tyrosine phosphatase
Ensembl F25H5.7
Entrez Gene 172740 Entrez gene
WormBase CE15903 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4721 phosphoprotein phosphatase activity inferred from electronic annotation QuickGO AmiGO
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02988 Hypothetical protein F25H5.7 [Caenorhabditis elegans] ref|NP_492454.1| F25H5.7 [Caenorhabditis elegans] 0.0
blast AAB37811 Hypothetical protein F55F8.7 [Caenorhabditis elegans] ref|NP_491657.1| F55F8.7 [Caenorhabditis elegans] 0.0
blast CAE75077 Hypothetical protein CBG22995 [Caenorhabditis briggsae] 1.0E-177
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.9E-100
Sequence
Target Sequence 
>C. ELEGANS:191565_AT
tgtgctctttattatcctgaaaaactcggtgaagttgtgaaattcggaaaatacgagatc
acactgactgaatgcaaagaagaagccatcgcaggaacaatttggaatgctttgactgta
accaatacggaggatgcctcttctgaaccattgtacatgaatcatgtgcaagttccatgg
tggccagatcaattggctccggaggatgctcgtccgatgatcgaattgtataaatgggtg
aagaaggtgaatccaaaggaaacgccgatttgtgtgcattgtagtgctggtgtcggaaga
actgccacttttgttggtatcgactacgcgactatccgcataatggaaaatccgaatatt
gagatgttggatattgtccgtgagatgcgtgcaatgcgtttccaagctgttcaatctcat
atgcaattcctattcctttatgttgttttgatggagtactttattggggaaggagtcgtt
gaacgtaccggacgagttgacacttttatgactcaatacaagaagcatgcacagaagaag
ttggcaaaacgtgcggcccagaatcaacaaggcgagaaattggcagcggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGCTCTTTATTATCCTGAAAAAC 368 557 865 Antisense
GAGATCACACTGACTGAATGCAAAG 310 395 919 Antisense
AATTTGGAATGCTTTGACTGTAACC 330 173 963 Antisense
CTGTAACCAATACGGAGGATGCCTC 238 239 980 Antisense
GGAAACGCCGATTTGTGTGCATTGT 686 525 1122 Antisense
AATGCGTTTCCAAGCTGTTCAATCT 381 167 1257 Antisense
CCAAGCTGTTCAATCTCATATGCAA 346 277 1266 Antisense
TTGAACGTACCGGACGAGTTGACAC 232 685 1343 Antisense
GAAGTTGGCAAAACGTGCGGCCCAG 599 335 1401 Antisense
AACGTGCGGCCCAGAATCAACAAGG 614 143 1412 Antisense
ACAAGGCGAGAAATTGGCAGCGGAA 447 113 1431 Antisense
Sequence Source Affymetrix Proprietary Database