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[191564_s_at] Protein-tyrosine phosphatase

Description F44F4.2 /REP_DB=WormBase Gene ID /WP=CE00998 /TR=Q20402 /GB=CAA85453.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Protein-tyrosine phosphatase
Cluster 6grp_total > 88      4grp_total > 55      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 53.4
(1.3)
A 		68.4
(3)
A 		23.7
(-2)
A 		15.1
(-3)
A 		53
B 39.5
(-1)
A 		12
(-3)
A 		94.8
(3)
A 		41.3
(-0.9)
A 		83
C 82.9
(1.8)
A 		74.2
(0.8)
A 		42
(-3)
A 		93.1
(3)
A 		51
avr 58.6
(3) 		51.5
(-1.8) 		53.5
(-0.5) 		49.8
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1072
1 2 3 4 5 6 range
A 57.3
(-3)
A 		76.8
(-2.8)
A 		53.1
(-3)
A 		100.5
(-2.7)
P 		519.5
(0.3)
P 		889.4
(3)
P 		836
B 54.9
(-2.9)
A 		51.1
(-3)
A 		43.1
(-3)
A 		132.6
(-2.5)
P 		612.7
(0.3)
P 		1086
(3)
P 		1043
C 70.2
(-2.5)
A 		13.7
(-3)
A 		84.9
(-2.4)
A 		119.7
(-2.1)
P 		550
(1.3)
P 		761.7
(3)
P 		748
avr 60.8
(-2.9) 		47.2
(-3) 		60.4
(-2.9) 		117.6
(-2.5) 		560.7
(0.6) 		912.4
(3) 		865
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 19.4
(3)
A 		14.8
(1.4)
A 		6.2
(-1.6)
A 		2.2
(-3)
A 		17
B 12.6
(0)
A 		3
(-3)
A 		22
(3)
A 		8.8
(-1.2)
A 		19
C 27.4
(3)
A 		21.3
(0.1)
A 		14.6
(-3)
A 		15.7
(-2.5)
A 		13
avr 19.8
(3) 		13
(-0.7) 		14.3
(-0) 		8.9
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 401
1 2 3 4 5 6 range
A 10.6
(-3)
A 		27.3
(-2.5)
A 		11.6
(-3)
A 		25.5
(-2.6)
P 		156.8
(1.3)
P 		216.5
(3)
P 		206
B 19.1
(-2.9)
A 		17
(-2.9)
A 		10.5
(-3)
A 		35.1
(-2.6)
P 		248.9
(0.6)
P 		405
(3)
P 		395
C 26
(-2.5)
A 		4.2
(-3)
A 		21.6
(-2.6)
A 		24.1
(-2.5)
P 		178
(1.2)
P 		255
(3)
P 		251
avr 18.6
(-2.9) 		16.2
(-3) 		14.6
(-3) 		28.2
(-2.7) 		194.6
(0.9) 		292.2
(3) 		278
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191564_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3543
Sequence Type Exemplar sequence
Representative Public ID F44F4.2 NCBI
Target Description F44F4.2 /REP_DB=WormBase Gene ID /WP=CE00998 /TR=Q20402 /GB=CAA85453.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Protein-tyrosine phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063940(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063940 NCBI Caenorhabditis elegans F44F4.2 (F44F4.2) mRNA, complete cds. 11/11 None
SNAP00000037179 ENSEMBL cdna:SNAP chromosome:CEL140:II:10882444:10884351:-1 11/11 None
GENEFINDER00000037199 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10882444:10884351:-1 11/11 None
F44F4.2.1 ENSEMBL cdna:known chromosome:CEL140:II:10882332:10884352:-1 gene:F44F4.2 11/11 None
F44F4.2.2 ENSEMBL cdna:known chromosome:CEL140:II:10882338:10884373:-1 gene:F44F4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10882440-10884348(-) 71.52 100.0
Public Domain and Genome References
Gene Title Protein-tyrosine phosphatase
Ensembl F44F4.2
Entrez Gene 174677 Entrez gene
SwissProt Q20402 EMBL-EBI
WormBase CE00998 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA85453 Hypothetical protein F44F4.2 [Caenorhabditis elegans] ref|NP_496341.1| F44F4.2 [Caenorhabditis elegans] 0.0
blast CAE73238 Hypothetical protein CBG20647 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 3.7E-73
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 3.7E-73
Sequence
Target Sequence 
>C. ELEGANS:191564_S_AT
tccactcgactcggcgaatcgtaatcactgtccgtactattggcctcgtgctgagaatga
atctcttcgttttggatcattccatattacttgtatgaaggttgactcgaaggcagatcc
attgttcaccatcactaaattgaaagttcaaaaagttggcggaaatcttttggatgctga
attcgatgaagaactctttttggagcactggcagtgggattggcaatatttgggagatgt
gcattggccattccgcgttttgagaaaagctcgtcaactctccacacctacaattgttca
gtgcattgatggatgctccaagtcaggaactctagtttccattgagactgctttgatgca
ttttatccgtggatctccaatcaccaaatcactaattcttcaatcatgcgtcttcgttcg
tctgcaacgtcgtctctccgtctcttcagttcttctctatctcttcatttaccgtgtcat
tcttcgttggatcgaaccttatgtcaacaagtggtaccatcgagccgcgctaggccttcg
cttcaaatcgatcggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCACTCGACTCGGCGAATCGTAAT 513 587 1065 Antisense
AATCGTAATCACTGTCCGTACTATT 652 145 1081 Antisense
CGTACTATTGGCCTCGTGCTGAGAA 200 247 1097 Antisense
AATCTCTTCGTTTTGGATCATTCCA 65 169 1124 Antisense
GAAGGCAGATCCATTGTTCACCATC 445 333 1173 Antisense
TGGGAGATGTGCATTGGCCATTCCG 585 553 1295 Antisense
CTCTCCACACCTACAATTGTTCAGT 15 233 1342 Antisense
TCTTCAATCATGCGTCTTCGTTCGT 213 617 1461 Antisense
TCTATCTCTTCATTTACCGTGTCAT 381 615 1520 Antisense
TTACCGTGTCATTCTTCGTTGGATC 218 681 1533 Antisense
GGCCTTCGCTTCAAATCGATCGGAT 3 543 1597 Antisense
Sequence Source Affymetrix Proprietary Database