[Home] | [Total List]

[191563_at] 7TM chemoreceptor, str family

Description R09E12.4 /REP_DB=WormBase Gene ID /WP=CE25074 /GEN=str-238 /TR=Q9GUE6 /GB=AAG24175.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 84      4grp_total > 10      6grp_cgc > 77      6grp_cgc_sub > 04_05_06      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 11.2
(-2.4)
A 		6.2
(-3)
A 		15.1
(-1.9)
A 		55.1
(3)
A 		49
B 14.5
(-3)
A 		41
(3)
A 		24
(-0.8)
A 		29.7
(0.4)
A 		27
C 28.8
(-1.2)
A 		25.2
(-2)
A 		20.6
(-3)
A 		48.4
(3)
A 		28
avr 18.2
(-3) 		24.1
(-1.6) 		19.9
(-2.6) 		44.4
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 11.3
(-3)
A 		13.2
(-2.7)
A 		16.7
(-2.2)
A 		52.2
(3)
A 		23
(-1.3)
A 		18.4
(-2)
A 		41
B 2.2
(-3)
A 		17.6
(0.7)
A 		14.1
(-0.1)
A 		5
(-2.3)
A 		27.2
(3)
A 		6.1
(-2.1)
A 		25
C 5.6
(-2.6)
A 		5.4
(-2.6)
A 		3.8
(-2.9)
A 		3.5
(-3)
A 		8.3
(-2.1)
A 		34.6
(3)
A 		31
avr 6.4
(-3) 		12.1
(-0.5) 		11.5
(-0.8) 		20.2
(3) 		19.5
(2.7) 		19.7
(2.8) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 4.1
(-0.5)
A 		1.3
(-3)
A 		3.9
(-0.7)
A 		8.1
(3)
A 		7
B 4.6
(-3)
A 		10.1
(3)
A 		5.6
(-1.9)
A 		6.3
(-1.1)
A 		6
C 9.5
(3)
A 		7.2
(-3)
A 		7.2
(-3)
A 		8.2
(-0.4)
A 		2
avr 6.1
(-1.4) 		6.2
(-1.1) 		5.6
(-3) 		7.5
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 2.1
(-3)
A 		4.7
(-1.6)
A 		3.6
(-2.2)
A 		13.2
(3)
A 		6.9
(-0.4)
A 		4.5
(-1.7)
A 		11
B 0.8
(-3)
A 		5.9
(0)
A 		3.4
(-1.5)
A 		1.3
(-2.7)
A 		11
(3)
A 		2.3
(-2.1)
A 		10
C 2.1
(-2.2)
A 		1.7
(-2.4)
A 		1
(-2.8)
A 		0.7
(-3)
A 		2.7
(-1.9)
A 		11.6
(3)
A 		11
avr 1.7
(-3) 		4.1
(-0.2) 		2.7
(-1.8) 		5.1
(0.9) 		6.9
(3) 		6.1
(2.1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191563_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14917
Sequence Type Exemplar sequence
Representative Public ID R09E12.4 NCBI
Target Description R09E12.4 /REP_DB=WormBase Gene ID /WP=CE25074 /GEN=str-238 /TR=Q9GUE6 /GB=AAG24175.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070918(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070918 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-238) (str-238) mRNA, complete cds. 11/11 None
R09E12.4 ENSEMBL cdna:known chromosome:CEL140:V:764862:772415:1 gene:R09E12.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015612 8/11 Cross Hyb Matching Probes None
GENEFINDER00000015618 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:764861-772415(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-238
Ensembl R09E12.4
Entrez Gene 192041 Entrez gene
SwissProt Q9GUE6 EMBL-EBI
WormBase CE25074 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24175 Seven tm receptor protein 238 [Caenorhabditis elegans] ref|NP_503319.1| Seven TM Receptor family member (str-238) [Caenorhabditis elegans] 0.0
blast AAC17786 Seven tm receptor protein 243 [Caenorhabditis elegans] ref|NP_503437.1| Seven TM Receptor family member (str-243) [Caenorhabditis elegans] 7.0E-73
blast AAC17787 Seven tm receptor protein 240 [Caenorhabditis elegans] ref|NP_503436.1| Seven TM Receptor family member (str-240) [Caenorhabditis elegans] 5.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.2E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503319.1 7 5-27,40-59,87-109,129-151,202-224,245-267,282-304
R09E12.4 7 5-27,40-59,87-109,129-151,202-224,245-267,282-304
Sequence
Target Sequence 
>C. ELEGANS:191563_AT
aaacgttgatctggctcttgattcctgttatctacggtttcctctgggcagtcaatttat
attgtacactatgggtcaacacggatactgaacagatattacaggggaatgggtatttac
gcgagaataagttaaacatatccgacgtaacatatattgggcccaactattggaaacttg
atgaaaatagaaatgaagttataaattggagaacaatgttgggaatgtctattgcatcga
cactgatctcgatttccttcgcaatgattgtcatttttgcaactttaagctacaaagagg
tctccaagctaaccgagctgacttcccactccgaaaaattccgttcaattcaactgcaac
ttttaaattctttggtgttgcaatcacttgtcccggcgtttttcatacagttgccatcgt
tcgtcctatttctggcgcctttttttcattgtggaaggccagtgtttggcgagataattg
gtgtgacggttgctctatacccagtcttggactcacttccaacaattttagtgatcaagg
ctttccgtgaagcaatatttcattgttgcccattcacta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACGTTGATCTGGCTCTTGATTCC 435 127 392 Antisense
TTGATTCCTGTTATCTACGGTTTCC 421 677 409 Antisense
GGTTTCCTCTGGGCAGTCAATTTAT 467 505 427 Antisense
TCGACACTGATCTCGATTTCCTTCG 456 601 628 Antisense
AAGAGGTCTCCAAGCTAACCGAGCT 581 153 686 Antisense
ATTCCGTTCAATTCAACTGCAACTT 244 9 729 Antisense
TTTGGTGTTGCAATCACTTGTCCCG 321 667 762 Antisense
TTTCATACAGTTGCCATCGTTCGTC 632 669 792 Antisense
TGGTGTGACGGTTGCTCTATACCCA 498 553 870 Antisense
TATACCCAGTCTTGGACTCACTTCC 358 661 887 Antisense
ATATTTCATTGTTGCCCATTCACTA 366 19 946 Antisense
Sequence Source Affymetrix Proprietary Database