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[191561_s_at]

Description R11A5.1A /REP_DB=WormBase Gene ID /WP=CE12722 /TR=O45718 /GB=CAB05598.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Human beta-nap protein like
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 20      4grp_highest_8_8 > 45      4grp_high_8_8 > 01      6grp_highest_nonorm > 62      6grp_total > 40      4grp_total > 15      6grp_cgc > 35      6grp_cgc_sub > Cu      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 253
1 2 3 4 range
A 501.7
(3)
P 		330.6
(-2.5)
P 		313.4
(-3)
P 		367.9
(-1.3)
P 		188
B 440.8
(1.4)
P 		261.9
(-3)
P 		282.9
(-2.5)
P 		504.3
(3)
P 		242
C 434.2
(2.8)
P 		251.6
(-3)
P 		307.7
(-1.2)
P 		441.1
(3)
P 		190
avr 458.9
(3) 		281.4
(-3) 		301.3
(-2.3) 		437.8
(2.3) 		178

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 229
1 2 3 4 5 6 range
A 433.5
(0)
P 		446.8
(0.5)
P 		512.3
(3)
P 		476.5
(1.6)
P 		354.5
(-3)
P 		377.7
(-2.1)
P 		158
B 558.2
(2.3)
P 		528.8
(1.5)
P 		583.3
(3)
P 		529.4
(1.5)
P 		368.3
(-3)
P 		560.2
(2.4)
P 		215
C 533.2
(3)
P 		529
(2.8)
P 		461.9
(0.4)
P 		532.4
(3)
P 		371.2
(-3)
P 		477.1
(0.9)
P 		162
avr 508.3
(2.6) 		501.5
(2.3) 		519.2
(3) 		512.8
(2.8) 		364.7
(-3) 		471.7
(1.2) 		155
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 182.7
(3)
P 		71.8
(-2.2)
P 		81.9
(-1.7)
P 		53.9
(-3)
P 		129
B 140.6
(3)
P 		64.7
(-3)
P 		65.6
(-2.9)
P 		107.5
(0.4)
P 		76
C 143.7
(3)
P 		72.3
(-3)
P 		107.2
(-0.1)
P 		74.4
(-2.8)
P 		71
avr 155.7
(3) 		69.6
(-3) 		84.9
(-1.9) 		78.6
(-2.4) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 79.9
(-3)
P 		158.9
(3)
P 		111.6
(-0.6)
P 		120.8
(0.1)
P 		107
(-0.9)
P 		92
(-2.1)
P 		79
B 194.2
(1.7)
P 		176
(0.1)
P 		141.6
(-2.9)
P 		140.2
(-3)
P 		149.6
(-2.2)
P 		208.9
(3)
P 		69
C 197.7
(3)
P 		161.4
(0.6)
P 		117.6
(-2.3)
P 		107.1
(-3)
P 		120.1
(-2.1)
P 		159.7
(0.5)
P 		91
avr 157.3
(1.9) 		165.4
(3) 		123.6
(-2.9) 		122.7
(-3) 		125.6
(-2.6) 		153.5
(1.3) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191561_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1778
Sequence Type Exemplar sequence
Representative Public ID R11A5.1A NCBI
Target Description R11A5.1A /REP_DB=WormBase Gene ID /WP=CE12722 /TR=O45718 /GB=CAB05598.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Human beta-nap protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059770(11), NM_059769(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059770 NCBI Caenorhabditis elegans R11A5.1b (apb-3) mRNA, complete cds. 11/11 None
NM_059769 NCBI Caenorhabditis elegans R11A5.1a (apb-3) mRNA, complete cds. 11/11 None
GENEFINDER00000037589 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7861876:7865872:1 11/11 None
SNAP00000037582 ENSEMBL cdna:SNAP chromosome:CEL140:I:7863535:7865872:1 11/11 None
R11A5.1b ENSEMBL cdna:known chromosome:CEL140:I:7861876:7865960:1 gene:R11A5.1 11/11 None
R11A5.1a ENSEMBL cdna:known chromosome:CEL140:I:7861912:7865872:1 gene:R11A5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7861842-7865803(+) 93.42 100.0
Public Domain and Genome References
Ensembl R11A5.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05601 Hypothetical protein R11A5.1b [Caenorhabditis elegans] ref|NP_492171.1| R11A5.1b [Caenorhabditis elegans] 0.0
blast CAB05598 Hypothetical protein R11A5.1a [Caenorhabditis elegans] ref|NP_492170.1| R11A5.1a [Caenorhabditis elegans] 0.0
blast CAE56125 Hypothetical protein CBG23734 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002553 EMBL-EBI Adaptin, N-terminal 1.0E-126
Pfam IPR002553 EMBL-EBI Adaptin, N-terminal 1.0E-126
Pfam IPR002553 EMBL-EBI Adaptin, N-terminal 1.0E-126
Pfam IPR002553 EMBL-EBI Adaptin, N-terminal 4.2E-60
Sequence
Target Sequence 
>C. ELEGANS:191561_S_AT
tattatcaattagttatccgcgtattaatgatggacaatacacggctattcgatttggaa
tcacaaacaaaaccgatggagatttgttaggagttgaattaaaaactgaagaaggtctcg
atgtgaagggaaactcgattattggagatattccgtctggagcacgagtttctgttgatt
tgctcgtagattttggagatagtgcgacaagtagagaatggatacttacaagagatgatg
gtcatgagaagcatttcagatttgaggtcccatatggtgagcaagttcaaccaattcgtc
tgtctccagaagatatttcaaaagaaagaagtcgtcttggaggtctcaatcggcatgtga
tacaactcgaaaatcccattaatccttcgtcaattgctctatttgttaacgcattttctt
cggatttgaccattttcacttgccagacacgttcacgaaaggatgtttgtattctgacag
tttcagaaaaatcgattgagtgctgttgtgacaactcggtgataggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTATCAATTAGTTATCCGCGTAT 503 663 2171 Antisense
GATGGACAATACACGGCTATTCGAT 277 407 2200 Antisense
GGAGATATTCCGTCTGGAGCACGAG 181 519 2314 Antisense
GTCTGGAGCACGAGTTTCTGTTGAT 94 471 2325 Antisense
GAGTTTCTGTTGATTTGCTCGTAGA 682 397 2336 Antisense
GAAGCATTTCAGATTTGAGGTCCCA 369 341 2418 Antisense
GAGGTCCCATATGGTGAGCAAGTTC 50 403 2434 Antisense
AGCAAGTTCAACCAATTCGTCTGTC 485 75 2450 Antisense
AATTCGTCTGTCTCCAGAAGATATT 617 177 2463 Antisense
GGATTTGACCATTTTCACTTGCCAG 32 511 2592 Antisense
TGTTGTGACAACTCGGTGATAGGAC 1 563 2674 Antisense
Sequence Source Affymetrix Proprietary Database