[Home] | [Total List]

[191560_s_at] Initiation factor 2 subunit

Description Y47H9C.7 /REP_DB=WormBase Gene ID /WP=CE20267 /TR=Q9XWD5 /GB=CAA21740.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Initiation factor 2 subunit
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 38      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 85      6grp_total > 09      4grp_total > 59      6grp_highest_sub > Cu      6grp_high1_sub > Cu      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 640
1 2 3 4 range
A 828.7
(-0.1)
P 		783
(-0.6)
P 		1095.4
(3)
P 		573
(-3)
P 		522
B 783.6
(-0.3)
P 		1090.3
(3)
P 		1031.4
(2.4)
P 		524.3
(-3)
P 		566
C 856.4
(-0.3)
P 		1164.1
(3)
P 		884.6
(-0)
P 		608.6
(-3)
P 		556
avr 822.9
(0.4) 		1012.5
(3) 		1003.8
(2.9) 		568.6
(-3) 		444

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 475
1 2 3 4 5 6 range
A 1020.5
(3)
P 		707
(-2.1)
P 		648.4
(-3)
P 		690.2
(-2.3)
P 		728.7
(-1.7)
P 		737.7
(-1.6)
P 		372
B 883.1
(2.6)
P 		545.1
(-3)
P 		864.9
(2.3)
P 		790.1
(1.1)
P 		695.5
(-0.5)
P 		905.9
(3)
P 		361
C 830
(1)
P 		762.2
(-0.6)
P 		672.1
(-2.7)
P 		916.9
(3)
P 		661.3
(-3)
P 		785.3
(-0.1)
P 		256
avr 911.2
(3) 		671.4
(-3) 		728.5
(-1.6) 		799.1
(0.2) 		695.2
(-2.4) 		809.6
(0.5) 		240
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 251
1 2 3 4 range
A 301.7
(3)
P 		170
(-0.6)
P 		286.4
(2.6)
P 		83.9
(-3)
P 		218
B 249.9
(2.3)
P 		269.3
(3)
P 		239
(1.8)
P 		111.7
(-3)
P 		158
C 283.5
(1.7)
P 		334.7
(3)
P 		308.3
(2.3)
P 		102.6
(-3)
P 		232
avr 278.4
(3) 		258
(2.3) 		277.9
(3) 		99.4
(-3) 		179

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 197
1 2 3 4 5 6 range
A 188.1
(-0.4)
P 		251.4
(3)
P 		141.2
(-3)
P 		175
(-1.2)
P 		219.9
(1.3)
P 		179.6
(-0.9)
P 		110
B 307.3
(1.8)
P 		181.4
(-3)
P 		210
(-1.9)
P 		209.3
(-1.9)
P 		282.6
(0.9)
P 		337.8
(3)
P 		156
C 307.6
(3)
P 		232.6
(-0.3)
P 		171.1
(-3)
P 		184.4
(-2.4)
P 		214
(-1.1)
P 		262.9
(1)
P 		137
avr 267.7
(3) 		221.8
(0.1) 		174.1
(-3) 		189.6
(-2) 		238.8
(1.1) 		260.1
(2.5) 		94
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191560_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1188
Sequence Type Exemplar sequence
Representative Public ID Y47H9C.7 NCBI
Target Description Y47H9C.7 /REP_DB=WormBase Gene ID /WP=CE20267 /TR=Q9XWD5 /GB=CAA21740.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Initiation factor 2 subunit
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060613(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060613 NCBI Caenorhabditis elegans Y47H9C.7 (Y47H9C.7) mRNA, complete cds. 11/11 None
SNAP00000036886 ENSEMBL cdna:SNAP chromosome:CEL140:I:11899835:11901842:-1 11/11 None
GENEFINDER00000036893 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11899835:11901079:-1 10/11 None
Y47H9C.7 ENSEMBL cdna:known chromosome:CEL140:I:11899721:11901849:-1 gene:Y47H9C.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11899765-11901773(-) 100.0 100.0
Public Domain and Genome References
Gene Title Initiation factor 2 subunit
Ensembl Y47H9C.7
Entrez Gene 173067 Entrez gene
SwissProt Q9XWD5 EMBL-EBI
WormBase CE20267 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6413 translational initiation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5851 eukaryotic translation initiation factor 2B complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3743 translation initiation factor activity inferred from electronic annotation QuickGO AmiGO
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21740 Hypothetical protein Y47H9C.7 [Caenorhabditis elegans] ref|NP_493014.1| Y47H9C.7 [Caenorhabditis elegans] 0.0
blast CAE69609 Hypothetical protein CBG15840 [Caenorhabditis briggsae] 1.0E-159
blast CAA21740 Hypothetical protein Y47H9C.7 [Caenorhabditis elegans] ref|NP_493014.1| Y47H9C.7 [Caenorhabditis elegans] 3.0E-88
blast CAE69609 Hypothetical protein CBG15840 [Caenorhabditis briggsae] 2.0E-78
blast ABB36433 RE60807p [Drosophila melanogaster] emb|CAA19648.1| EG:100G10.3 [Drosophila melanogaster] gb|AAF45809.1| CG2677-PA [Drosophila melanogaster] ref|NP_570020.1| CG2677-PA [Drosophila melanogaster] gb|AAG38015.1| eukaryotic initiation factor eIF2B beta subunit [Drosophila melanogaster] emb|CAC82992.1| eIF2B-beta protein [Drosophila melanogaster] 5.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR000649 EMBL-EBI Initiation factor 2B 2.0E-6
Pfam IPR000649 EMBL-EBI Initiation factor 2B 2.0E-6
Sequence
Target Sequence 
>C. ELEGANS:191560_S_AT
gtactagttcattcacttcgttcatctcaaacaatgcacaatttcctatcacatgccgtc
aaatcaggccgaaaacatcgtgtaattgatgtagttgatgaagaagaacatattgaatca
actcctgactttgcaactgcaattgagctctatgaagtcgcctcgaagatgcctgaagcc
tcgaaagttgttctagtcgctgctgcttatttccctgatggatcatgtcttgtacctgct
ggtggacatcaaattgcacttcttgccaagaggcattgtgttccagtctacgtgctcgct
ccattctacaaactgtgtccattcttcatgacaaatccggattccctgcacacattccgc
tcgaattcccttccattcgatctatcagccaaatcagcaggccttgtagactgtcttcat
ccggcatttgattgtcttcaatctgatttggttaccctttttgtctcgaatacttcatgc
gttattccgtctcatgtgaatcgtctcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACTAGTTCATTCACTTCGTTCAT 490 459 487 Antisense
GCACAATTTCCTATCACATGCCGTC 365 317 522 Antisense
AATCAACTCCTGACTTTGCAACTGC 482 171 602 Antisense
CTGCTGCTTATTTCCCTGATGGATC 494 237 686 Antisense
TGATGGATCATGTCTTGTACCTGCT 706 565 702 Antisense
AGAGGCATTGTGTTCCAGTCTACGT 218 69 755 Antisense
TACAAACTGTGTCCATTCTTCATGA 313 643 793 Antisense
CCTTCCATTCGATCTATCAGCCAAA 533 269 855 Antisense
GCCTTGTAGACTGTCTTCATCCGGC 696 279 887 Antisense
TACCCTTTTTGTCTCGAATACTTCA 672 643 939 Antisense
TTCCGTCTCATGTGAATCGTCTCAA 491 699 971 Antisense
Sequence Source Affymetrix Proprietary Database