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[191559_s_at] sodium/phosphate transporter

Description F11A5.9 /REP_DB=WormBase Gene ID /WP=CE15787 /TR=O17785 /GB=CAB07353.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=sodium-phosphate transporter
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 91      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_highest_nonorm > 64      6grp_total > 83      4grp_total > 30      6grp_highest_sub > 05      6grp_high1_sub > 05      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 743
1 2 3 4 range
A 1432.2
(3)
P 		1020.2
(-1)
P 		819.3
(-3)
P 		1219.9
(0.9)
P 		613
B 1562.3
(3)
P 		950
(-2.6)
P 		909.4
(-3)
P 		1198.1
(-0.3)
P 		653
C 1530.7
(3)
P 		993.6
(-2.2)
P 		910.7
(-3)
P 		1285.5
(0.6)
P 		620
avr 1508.4
(3) 		987.9
(-2) 		879.8
(-3) 		1234.5
(0.4) 		629

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 927
1 2 3 4 5 6 range
A 797
(-1.1)
P 		637.8
(-2.1)
P 		811.1
(-1)
P 		891.6
(-0.5)
P 		1424.8
(3)
P 		497.6
(-3)
P 		927
B 692.7
(-2.2)
P 		618.1
(-3)
P 		772
(-1.4)
P 		1184.9
(2.9)
P 		1194.3
(3)
P 		619.9
(-3)
P 		576
C 577.2
(-3)
P 		584.1
(-2.9)
P 		918
(-0.2)
P 		1089.6
(1.1)
P 		1320
(3)
P 		592.5
(-2.9)
P 		743
avr 689
(-2) 		613.3
(-2.7) 		833.7
(-0.9) 		1055.4
(0.9) 		1313
(3) 		570
(-3) 		743
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 343
1 2 3 4 range
A 521.5
(3)
P 		221.5
(-2.2)
P 		214.2
(-2.4)
P 		178.6
(-3)
P 		343
B 498.2
(3)
P 		234.6
(-2.5)
P 		210.7
(-3)
P 		255.3
(-2.1)
P 		288
C 506.7
(3)
P 		285.7
(-1.6)
P 		317.4
(-0.9)
P 		216.8
(-3)
P 		290
avr 508.8
(3) 		247.3
(-2.4) 		247.4
(-2.4) 		216.9
(-3) 		292

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 364
1 2 3 4 5 6 range
A 146.9
(-2.5)
P 		226.8
(-0.9)
P 		176.6
(-1.9)
P 		226.1
(-1)
P 		429.9
(3)
P 		121.1
(-3)
P 		309
B 241
(-1.9)
P 		205.7
(-2.6)
P 		187.5
(-3)
P 		313.8
(-0.5)
P 		485.2
(3)
P 		231.2
(-2.1)
P 		298
C 213.9
(-2.1)
P 		178.2
(-3)
P 		233.6
(-1.7)
P 		219.1
(-2)
P 		427.1
(3)
P 		198.3
(-2.5)
P 		249
avr 200.6
(-2.6) 		203.6
(-2.5) 		199.2
(-2.6) 		253
(-1.4) 		447.4
(3) 		183.5
(-3) 		264
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191559_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14579
Sequence Type Exemplar sequence
Representative Public ID F11A5.9 NCBI
Target Description F11A5.9 /REP_DB=WormBase Gene ID /WP=CE15787 /TR=O17785 /GB=CAB07353.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=sodium-phosphate transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074688(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074688 NCBI Caenorhabditis elegans F11A5.9 (F11A5.9) mRNA, complete cds. 11/11 None
SNAP00000027002 ENSEMBL cdna:SNAP chromosome:CEL140:V:16217482:16219985:1 11/11 None
GENEFINDER00000027007 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16217482:16219985:1 11/11 None
F11A5.9.2 ENSEMBL cdna:known chromosome:CEL140:V:16217473:16220282:1 gene:F11A5.9 11/11 None
F11A5.9.1 ENSEMBL cdna:known chromosome:CEL140:V:16217476:16220282:1 gene:F11A5.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16217481-16219985(+) 100.0 100.0
Public Domain and Genome References
Gene Title sodium/phosphate transporter
Ensembl F11A5.9
Entrez Gene 180085 Entrez gene
SwissProt O17785 EMBL-EBI
WormBase CE15787 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07353 Hypothetical protein F11A5.9 [Caenorhabditis elegans] ref|NP_507089.1| F11A5.9 [Caenorhabditis elegans] 0.0
blast CAE61120 Hypothetical protein CBG04877 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507089.1 12 29-51,112-131,138-160,165-187,196-218,228-250,308-330,345-367,379-401,405-427,440-462,472-494
F11A5.9.2 12 29-51,112-131,138-160,165-187,196-218,228-250,308-330,345-367,379-401,405-427,440-462,472-494
F11A5.9.1 12 29-51,112-131,138-160,165-187,196-218,228-250,308-330,345-367,379-401,405-427,440-462,472-494
SNAP00000027002 12 29-51,112-131,138-160,165-187,196-218,228-250,290-312,327-349,361-383,387-409,422-444,454-476
GENEFINDER00000027007 12 29-51,112-131,138-160,165-187,196-218,228-250,290-312,327-349,361-383,387-409,450-472,482-504
Sequence
Target Sequence 
>C. ELEGANS:191559_S_AT
cagacgggaactttcagtgccattcctcaaatcgtcacatttttcctgaaagtgattgct
ggttatgcggcggataaggcaagatgttgtactccacaaacctctgtcaaaatctataac
aacttggcgctgggtggcatgagtttgtcgttcctgggacttgcagtcatcccagtctcg
gagcccgttctcggactttgcatgctcattttctcgtgctcaattattggattcaactgt
ggcgctttcttcagaagctccgcaatctatgcagctcaacacaatcacttcatcatgggc
gtcaactcgttcctcaattgcctcgccgccctcctcgcacccgtcatcgtgaacatcttc
gtcgccaacgacacttgggacgagtggtggtgggtatggatggtccactttgtcacactt
ttcgtcttcaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGACGGGAACTTTCAGTGCCATTC 254 205 1042 Antisense
AGTGCCATTCCTCAAATCGTCACAT 207 61 1057 Antisense
TGTACTCCACAAACCTCTGTCAAAA 627 559 1129 Antisense
GCTGGGTGGCATGAGTTTGTCGTTC 3 295 1170 Antisense
TTTGTCGTTCCTGGGACTTGCAGTC 123 667 1185 Antisense
TTCTCGGACTTTGCATGCTCATTTT 138 693 1229 Antisense
ATTGGATTCAACTGTGGCGCTTTCT 703 3 1267 Antisense
ACTTCATCATGGGCGTCAACTCGTT 78 103 1328 Antisense
TCTTCGTCGCCAACGACACTTGGGA 699 615 1397 Antisense
TATGGATGGTCCACTTTGTCACACT 301 655 1436 Antisense
TTTGTCACACTTTTCGTCTTCAACA 589 667 1450 Antisense
Sequence Source Affymetrix Proprietary Database