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[191557_at] sodium/phosphate transporter

Description T04H1.1 /REP_DB=WormBase Gene ID /WP=CE13167 /TR=Q22175 /GB=CAB01579.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=sodium-phosphate transporter
Cluster 6grp_total > 32      4grp_total > 27      6grp_cgc > 70      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 3.4
(-2.5)
A 		2.2
(-2.9)
A 		2
(-3)
A 		17.5
(3)
A 		16
B 27.8
(3)
A 		16.8
(0.3)
A 		5.1
(-2.5)
A 		3
(-3)
A 		25
C 5.4
(-2.7)
A 		35.1
(0.2)
A 		1.9
(-3)
A 		63.6
(3)
A 		62
avr 12.2
(-0.8) 		18
(0.6) 		3
(-3) 		28
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 28
(0.2)
A 		34.2
(0.9)
A 		40.8
(1.7)
A 		13.4
(-1.6)
A 		51.4
(3)
A 		1.9
(-3)
A 		50
B 30.1
(1.4)
A 		12.9
(-1.3)
A 		28.1
(1.1)
A 		2.9
(-2.8)
A 		40.5
(3)
A 		1.6
(-3)
A 		39
C 40.7
(3)
A 		28.8
(1.2)
A 		29.7
(1.3)
A 		38.4
(2.6)
A 		2
(-2.9)
A 		1.4
(-3)
A 		39
avr 32.9
(3) 		25.3
(1.5) 		32.9
(3) 		18.2
(0.2) 		31.3
(2.7) 		1.6
(-3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.2
(-1)
A 		0.5
(-3)
A 		0.5
(-3)
A 		2.6
(3)
A 		2
B 8.9
(3)
A 		4.2
(-0.4)
A 		1.2
(-2.6)
A 		0.6
(-3)
A 		8
C 1.8
(-2.3)
A 		10.1
(2.6)
A 		0.7
(-3)
A 		10.7
(3)
A 		10
avr 4
(1.7) 		4.9
(3) 		0.8
(-3) 		4.6
(2.6) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 5.2
(-1.1)
A 		12.1
(1.6)
A 		8.9
(0.4)
A 		3.4
(-1.8)
A 		15.5
(3)
A 		0.5
(-3)
A 		15
B 10.5
(0.7)
A 		4.3
(-1.6)
A 		6.8
(-0.7)
A 		0.8
(-2.9)
A 		16.5
(3)
A 		0.6
(-3)
A 		16
C 15.1
(3)
A 		8.8
(0.4)
A 		7.6
(-0.1)
A 		7.7
(-0)
A 		0.6
(-3)
A 		0.5
(-3)
A 		15
avr 10.3
(2.7) 		8.4
(1.6) 		7.8
(1.2) 		4
(-1) 		10.9
(3) 		0.5
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191557_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14777
Sequence Type Exemplar sequence
Representative Public ID T04H1.1 NCBI
Target Description T04H1.1 /REP_DB=WormBase Gene ID /WP=CE13167 /TR=Q22175 /GB=CAB01579.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=sodium-phosphate transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073665(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073665 NCBI Caenorhabditis elegans T04H1.1 (T04H1.1) mRNA, complete cds. 11/11 None
GENEFINDER00000026411 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12239483:12244500:1 11/11 None
T04H1.1 ENSEMBL cdna:known chromosome:CEL140:V:12239483:12241187:1 gene:T04H1.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026397 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12239482-12241187(+) 100.0 100.0
Public Domain and Genome References
Gene Title sodium/phosphate transporter
Gene Symbol tag-348
Ensembl T04H1.1
Entrez Gene 188070 Entrez gene
SwissProt Q22175 EMBL-EBI
WormBase CE13167 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01579 Hypothetical protein T04H1.1 [Caenorhabditis elegans] ref|NP_506066.1| T04H1.1 [Caenorhabditis elegans] 0.0
blast AAB69904 Hypothetical protein T02B11.6 [Caenorhabditis elegans] ref|NP_503350.1| T02B11.6 [Caenorhabditis elegans] 4.0E-87
blast AAB69904 Hypothetical protein T02B11.6 [Caenorhabditis elegans] ref|NP_503350.1| T02B11.6 [Caenorhabditis elegans] 9.0E-87
blast CAB01586 Hypothetical protein T04H1.10 [Caenorhabditis elegans] ref|NP_506067.1| Serpentine Receptor, class W family member (srw-80) [Caenorhabditis elegans] 3.0E-85
blast CAE71053 Hypothetical protein CBG17895 [Caenorhabditis briggsae] 6.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR001534 EMBL-EBI Transthyretin-like 1.3E-62
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506066.1 9 10-32,64-86,106-125,172-194,204-226,239-261,266-288,301-323,333-355
T04H1.1 9 10-32,64-86,106-125,172-194,204-226,239-261,266-288,301-323,333-355
GENEFINDER00000026411 13 10-32,64-86,106-125,172-194,204-226,239-261,266-288,301-323,333-355,395-417,461-483,510-532,595-617
Sequence
Target Sequence 
>C. ELEGANS:191557_AT
gttgctggttcaatgctttcatggatttatcaatgtcaatccttctgataacctactctc
caatatatttcaatcaagttttgaaatttacaatcgaacaaactggatttattatcagta
taaccaattttgcacagatccctttcaaattactcgctgcgtatattagtgataaagtta
catttattagtcctcgtactaaaatgctaattttcaattttatatcatgtggtattgtgt
ctattctatttggaatcgttggatttgttgatgaagctcatcgctggtgggctatgacct
tggttacagctgttaactgtatgatgtctacaaactgtggtggatattatcaatgtgcaa
gatacgtggcattacagtatgcggacgtcgtgattgctgcaatacaattttgcaaagcaa
ttgcattattctttgttccagcattagtagctctgacagttcacgatgagaatagccggg
cacaatgggcaactgcgttttgtattaattcaggcctattgcttgtggcaacgttcacct
cattttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGCTGGTTCAATGCTTTCATGGA 701 439 524 Antisense
GTCAATCCTTCTGATAACCTACTCT 615 463 558 Antisense
TAACCTACTCTCCAATATATTTCAA 466 637 572 Antisense
AACCAATTTTGCACAGATCCCTTTC 228 149 645 Antisense
TCCCTTTCAAATTACTCGCTGCGTA 492 597 662 Antisense
GATGAAGCTCATCGCTGGTGGGCTA 155 411 793 Antisense
GGTGGGCTATGACCTTGGTTACAGC 105 499 809 Antisense
GTATGCGGACGTCGTGATTGCTGCA 245 455 900 Antisense
GCATTATTCTTTGTTCCAGCATTAG 594 307 946 Antisense
TAGCCGGGCACAATGGGCAACTGCG 96 651 996 Antisense
TTGTGGCAACGTTCACCTCATTTTT 18 709 1046 Antisense
Sequence Source Affymetrix Proprietary Database