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[191554_at] homeotic protein PBX2

Description F22A3.4 /REP_DB=WormBase Gene ID /WP=CE04440 /TR=Q19696 /GB=AAA83195.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=human homeotic protein PBX2
Cluster 6grp_total > 84      4grp_total > 13      6grp_cgc > 77      6grp_cgc_sub > 04_05_06      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 62.8
(-0.7)
P 		21.9
(-2.6)
A 		12.3
(-3)
A 		146.1
(3)
M 		134
B 99.1
(3)
P 		34.1
(-1.3)
A 		7.4
(-3)
A 		94.7
(2.7)
P 		92
C 33.2
(-1.8)
P 		27.2
(-2.1)
A 		5.5
(-3)
A 		143.8
(3)
P 		138
avr 65
(-0.2) 		27.7
(-2) 		8.4
(-3) 		128.2
(3) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 132
1 2 3 4 5 6 range
A 43.3
(-2.5)
A 		36.1
(-3)
A 		106.8
(1.9)
P 		122.5
(3)
P 		103.7
(1.7)
P 		92.1
(0.9)
P 		86
B 39.9
(-2.4)
A 		27.5
(-3)
A 		37.9
(-2.5)
P 		80.3
(-0.5)
P 		153.4
(3)
P 		91.1
(0)
P 		126
C 21.4
(-3)
A 		67.2
(0.1)
P 		80.8
(1)
P 		66.3
(0)
P 		110.3
(3)
P 		103.3
(2.5)
P 		89
avr 34.9
(-3) 		43.6
(-2.4) 		75.2
(-0.2) 		89.7
(0.8) 		122.5
(3) 		95.5
(1.2) 		88
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 22.9
(3)
P 		4.8
(-2.5)
A 		3.2
(-3)
A 		21.4
(2.5)
M 		20
B 31.6
(3)
P 		8.4
(-1.7)
A 		1.7
(-3)
A 		20.2
(0.7)
P 		30
C 11
(-0.6)
P 		7.8
(-1.4)
A 		1.9
(-3)
A 		24.2
(3)
P 		22
avr 21.8
(3) 		7
(-1.6) 		2.3
(-3) 		21.9
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 8
(-3)
A 		12.8
(-1.8)
A 		23.3
(0.9)
P 		31.1
(2.9)
P 		31.3
(3)
P 		22.4
(0.7)
P 		23
B 13.9
(-2.5)
A 		9.2
(-3)
A 		9.2
(-3)
P 		21.3
(-1.6)
P 		62.3
(3)
P 		34
(-0.2)
P 		53
C 7.9
(-3)
A 		20.5
(-0.3)
P 		20.6
(-0.3)
P 		13.3
(-1.8)
P 		35.7
(3)
P 		34.6
(2.8)
P 		28
avr 9.9
(-3) 		14.2
(-2.2) 		17.7
(-1.6) 		21.9
(-0.8) 		43.1
(3) 		30.3
(0.7) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191554_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16475
Sequence Type Exemplar sequence
Representative Public ID F22A3.4 NCBI
Target Description F22A3.4 /REP_DB=WormBase Gene ID /WP=CE04440 /TR=Q19696 /GB=AAA83195.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=human homeotic protein PBX2
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076700(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076700 NCBI Caenorhabditis elegans C.Elegans Homeobox family member (ceh-60) (ceh-60) mRNA, complete cds. 11/11 None
GENEFINDER00000004718 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6522738:6529347:-1 11/11 None
SNAP00000004713 ENSEMBL cdna:SNAP chromosome:CEL140:X:6524318:6524527:-1 11/11 None
F22A3.4 ENSEMBL cdna:known chromosome:CEL140:X:6524318:6524527:-1 gene:F22A3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6524317-6524527(-) 100.0 100.0
Public Domain and Genome References
Gene Title homeotic protein PBX2
Gene Symbol ceh-60
Ensembl F22A3.4
Entrez Gene 184803 Entrez gene
WormBase CE38506 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_509101 C.Elegans Homeobox family member (ceh-60) [Caenorhabditis elegans] gb|AAX88831.1| C.elegans homeobox protein 60 [Caenorhabditis elegans] 1.0E-144
blast NP_509101 C.Elegans Homeobox family member (ceh-60) [Caenorhabditis elegans] gb|AAX88831.1| C.elegans homeobox protein 60 [Caenorhabditis elegans] 1.0E-135
blast CAE65749 Hypothetical protein CBG10835 [Caenorhabditis briggsae] 1.0E-129
blast CAE65749 Hypothetical protein CBG10835 [Caenorhabditis briggsae] 1.0E-103
blast T34237 hypothetical protein F22A3.5 - Caenorhabditis elegans 6.0E-43
blast T34237 hypothetical protein F22A3.5 - Caenorhabditis elegans 8.0E-43
blast T34236 hypothetical protein F22A3.4 - Caenorhabditis elegans 3.0E-21
blast NP_509101 C.Elegans Homeobox family member (ceh-60) [Caenorhabditis elegans] gb|AAX88831.1| C.elegans homeobox protein 60 [Caenorhabditis elegans] 3.0E-21
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 9.99999988726602E-27
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 1.00000000317108E-28
Pfam IPR001356 EMBL-EBI Homeobox 4.1E-9
Pfam IPR001356 EMBL-EBI Homeobox 4.1E-9
Sequence
Target Sequence 
>C. ELEGANS:191554_AT
gagctgcatcaatggctaacgaagcacaagcaattcagaattctttgaacagttctacgg
ttgcatcttcgtcgaatatgagcacatcggggctcattaacattccgctggttaacccaa
caatgcaatcaatggtaattcctgcagtgcaaccaggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCTGCATCAATGGCTAACGAAGC 109 387 35 Antisense
GAAGCACAAGCAATTCAGAATTCTT 545 341 55 Antisense
GAACAGTTCTACGGTTGCATCTTCG 61 349 81 Antisense
GTTCTACGGTTGCATCTTCGTCGAA 481 443 86 Antisense
CTTCGTCGAATATGAGCACATCGGG 168 217 101 Antisense
GCACATCGGGGCTCATTAACATTCC 427 317 116 Antisense
TCGGGGCTCATTAACATTCCGCTGG 107 607 121 Antisense
ACATTCCGCTGGTTAACCCAACAAT 501 103 134 Antisense
GGTTAACCCAACAATGCAATCAATG 221 505 144 Antisense
TCAATGGTAATTCCTGCAGTGCAAC 646 631 163 Antisense
GGTAATTCCTGCAGTGCAACCAGGC 175 497 168 Antisense
Sequence Source Affymetrix Proprietary Database