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[191553_at] protein-tyrosine phosphatase

Description F10G8.4 /REP_DB=WormBase Gene ID /WP=CE09339 /TR=Q93455 /GB=CAB02281.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster 4grp_high_8_8 > 27      6grp_total > 34      4grp_total > 36      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 63.6
(2.4)
P 		65.7
(3)
P 		43.8
(-3)
A 		56.2
(0.4)
P 		22
B 66
(3)
P 		56
(1.7)
P 		20.7
(-3)
A 		53.9
(1.4)
A 		45
C 58.5
(-0.5)
P 		81.3
(3)
P 		42.6
(-3)
P 		46.9
(-2.3)
A 		39
avr 62.7
(2.1) 		67.7
(3) 		35.7
(-3) 		52.3
(0.1) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 95.2
(3)
P 		64.4
(1)
P 		55.5
(0.4)
P 		7.4
(-2.7)
A 		54.1
(0.3)
A 		3.1
(-3)
A 		92
B 57.4
(-0.3)
P 		89.4
(3)
P 		71.8
(1.2)
P 		38.9
(-2.1)
A 		61
(0.1)
A 		30.5
(-3)
A 		59
C 57
(0.7)
P 		71.9
(1.9)
P 		84.6
(3)
P 		13.5
(-3)
A 		47.2
(-0.2)
P 		33.4
(-1.3)
A 		71
avr 69.9
(2.4) 		75.2
(3) 		70.6
(2.5) 		19.9
(-3) 		54.1
(0.7) 		22.3
(-2.7) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 23.2
(3)
P 		14.3
(-0.6)
P 		11.4
(-1.7)
A 		8.2
(-3)
P 		15
B 21
(3)
P 		13.8
(0.3)
P 		4.8
(-3)
A 		11.5
(-0.5)
A 		16
C 19.4
(1.5)
P 		23.4
(3)
P 		14.9
(-0.3)
P 		7.9
(-3)
A 		16
avr 21.2
(3) 		17.2
(1) 		10.4
(-2.4) 		9.2
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 17.5
(1.5)
P 		22.9
(3)
P 		12.1
(0.1)
P 		1.9
(-2.7)
A 		16.3
(1.2)
A 		0.8
(-3)
A 		22
B 20
(-0)
P 		29.8
(3)
P 		17.4
(-0.8)
P 		10.3
(-3)
A 		24.8
(1.5)
A 		11.4
(-2.7)
A 		20
C 21.1
(2.8)
P 		21.9
(3)
P 		21.5
(2.9)
P 		2.7
(-3)
A 		15.3
(0.9)
P 		11.2
(-0.3)
A 		19
avr 19.5
(1.4) 		24.9
(3) 		17
(0.6) 		5
(-3) 		18.8
(1.2) 		7.8
(-2.2) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191553_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.454
Sequence Type Exemplar sequence
Representative Public ID F10G8.4 NCBI
Target Description F10G8.4 /REP_DB=WormBase Gene ID /WP=CE09339 /TR=Q93455 /GB=CAB02281.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060248(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060248 NCBI Caenorhabditis elegans F10G8.4 (F10G8.4) mRNA, complete cds. 11/11 None
SNAP00000036092 ENSEMBL cdna:SNAP chromosome:CEL140:I:10031931:10033659:1 11/11 None
F10G8.4 ENSEMBL cdna:known chromosome:CEL140:I:10031931:10033659:1 gene:F10G8.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000036107 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10031861-10033590(+) 100.0 100.0
Public Domain and Genome References
Gene Title protein-tyrosine phosphatase
Ensembl F10G8.4
Entrez Gene 184324 Entrez gene
SwissProt Q93455 EMBL-EBI
WormBase CE09339 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02281 Hypothetical protein F10G8.4 [Caenorhabditis elegans] ref|NP_492649.1| F10G8.4 [Caenorhabditis elegans] 0.0
blast CAA19518 Hypothetical protein Y44A6D.4 [Caenorhabditis elegans] ref|NP_508013.2| Synthetic Dauer Formation family member (sdf-9) [Caenorhabditis elegans] dbj|BAC75705.1| SDF-9 protein [Caenorhabditis elegans] 1.0E-42
blast CAA19518 Hypothetical protein Y44A6D.4 [Caenorhabditis elegans] ref|NP_508013.2| Synthetic Dauer Formation family member (sdf-9) [Caenorhabditis elegans] dbj|BAC75705.1| SDF-9 protein [Caenorhabditis elegans] 7.0E-41
blast AAH70582 MGC81122 protein [Xenopus laevis] 4.0E-18
blast AAH70582 MGC81122 protein [Xenopus laevis] 3.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 8.5E-63
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 2.5E-65
Sequence
Target Sequence 
>C. ELEGANS:191553_AT
gaaacacaccaagttcaccattataaatttcacggttggactgaattcaatctaccaaaa
tatgaagactttatggcattctacaatacaatgaaagaagttggagttccattacttgct
gtaatgaaaaataactgtatgtcttcctttttcaaaaaatatcatcatactcctccaacc
aatgctccaattattcaatgttcaaccggaggagctcgttgtggtgtattcataataatt
gatattcttatcaatttaatcgataatagaattaaaaattcatattcaattgagtggtgg
atgttaaaagtgcgaagtaaacgtaatcattctgcactcaccaaccaacaacattcattt
atttatgatattattatcaaatacattcgaacgcgacacaatcaactccgccacctcgaa
aaatatctagaagcgcacgcgaatactgtaagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACACACCAAGTTCACCATTATA 25 357 577 Antisense
GTTGGAGTTCCATTACTTGCTGTAA 33 437 676 Antisense
ATAACTGTATGTCTTCCTTTTTCAA 562 25 707 Antisense
AAAAATATCATCATACTCCTCCAAC 537 129 731 Antisense
CTCCAACCAATGCTCCAATTATTCA 152 237 749 Antisense
TCAATGTTCAACCGGAGGAGCTCGT 653 631 771 Antisense
GAGGAGCTCGTTGTGGTGTATTCAT 101 405 785 Antisense
TAAACGTAATCATTCTGCACTCACC 19 641 894 Antisense
TTCGAACGCGACACAATCAACTCCG 537 685 962 Antisense
CAACTCCGCCACCTCGAAAAATATC 383 187 979 Antisense
GAAGCGCACGCGAATACTGTAAGAA 262 343 1006 Antisense
Sequence Source Affymetrix Proprietary Database