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[191551_at] 7TM chemoreceptor, srh family

Description C03G6.11 /REP_DB=WormBase Gene ID /WP=CE07885 /GEN=srh-231 /TR=O01450 /GB=AAB52311.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 92      4grp_total > 05      6grp_cgc > 99      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 31.8
(-1.4)
A 		12.9
(-2.9)
A 		12
(-3)
A 		84.3
(3)
A 		72
B 53.6
(3)
A 		41.7
(-3)
A 		42.9
(-2.4)
A 		42.3
(-2.7)
A 		12
C 45.6
(0.4)
A 		11.5
(-3)
A 		17.6
(-2.4)
A 		71.3
(3)
A 		60
avr 43.7
(-0) 		22
(-3) 		24.2
(-2.7) 		66
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 57
(1.4)
A 		21
(-1.6)
A 		72.1
(2.6)
A 		4
(-3)
A 		76.6
(3)
A 		33.6
(-0.6)
A 		73
B 24.9
(-0.8)
A 		37.3
(0.8)
A 		7
(-3)
A 		22.4
(-1.1)
A 		55.2
(3)
P 		14.6
(-2.1)
A 		48
C 2.7
(-3)
A 		79.5
(3)
A 		44.7
(0.3)
A 		61.6
(1.6)
A 		27
(-1.1)
A 		36.8
(-0.3)
A 		77
avr 28.2
(-3) 		45.9
(1.3) 		41.3
(0.2) 		29.3
(-2.7) 		52.9
(3) 		28.3
(-3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 11.6
(2.6)
A 		2.8
(-3)
A 		3.1
(-2.8)
A 		12.3
(3)
A 		10
B 17.1
(3)
A 		10.3
(-2)
A 		9.9
(-2.3)
A 		9
(-3)
A 		8
C 15.1
(3)
A 		3.3
(-3)
A 		6.1
(-1.6)
A 		12
(1.4)
A 		12
avr 14.6
(3) 		5.5
(-3) 		6.4
(-2.4) 		11.1
(0.7) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 10.5
(-0.4)
A 		7.5
(-1.2)
A 		15.7
(1)
A 		1
(-3)
A 		23.1
(3)
A 		8.2
(-1)
A 		22
B 8.7
(-1)
A 		12.4
(0.1)
A 		1.7
(-3)
A 		5.9
(-1.8)
A 		22.4
(3)
P 		5.5
(-1.9)
A 		21
C 1
(-3)
A 		24.3
(3)
A 		11.4
(-0.3)
A 		12.4
(-0.1)
A 		8.7
(-1)
A 		12.3
(-0.1)
A 		23
avr 6.7
(-2.8) 		14.7
(1.3) 		9.6
(-1.4) 		6.4
(-3) 		18.1
(3) 		8.7
(-1.8) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191551_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11297
Sequence Type Exemplar sequence
Representative Public ID C03G6.11 NCBI
Target Description C03G6.11 /REP_DB=WormBase Gene ID /WP=CE07885 /GEN=srh-231 /TR=O01450 /GB=AAB52311.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072474(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072474 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-231) (srh-231) mRNA, complete cds. 11/11 None
SNAP00000031550 ENSEMBL cdna:SNAP chromosome:CEL140:V:7353474:7354045:-1 11/11 None
GENEFINDER00000031566 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7350870:7354697:-1 9/11 None
C03G6.11 ENSEMBL cdna:known chromosome:CEL140:V:7353474:7354829:-1 gene:C03G6.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7353474-7354830(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-231
Ensembl C03G6.11
Entrez Gene 182173 Entrez gene
SwissProt O01450 EMBL-EBI
WormBase CE35951 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52311 Serpentine receptor, class h protein 231 [Caenorhabditis elegans] ref|NP_504875.2| Serpentine Receptor, class H family member (srh-231) [Caenorhabditis elegans] 0.0
blast AAB52312 Hypothetical protein C03G6.12 [Caenorhabditis elegans] ref|NP_504874.1| C03G6.12 [Caenorhabditis elegans] 0.0
blast AAB52311 Serpentine receptor, class h protein 231 [Caenorhabditis elegans] ref|NP_504875.2| Serpentine Receptor, class H family member (srh-231) [Caenorhabditis elegans] 1.0E-152
blast NP_504982 Serpentine Receptor, class H family member (srh-234) [Caenorhabditis elegans] gb|AAG24047.2| Serpentine receptor, class h protein 234 [Caenorhabditis elegans] 1.0E-131
blast CAB04854 Hypothetical protein T26H5.3 [Caenorhabditis elegans] ref|NP_506842.1| Serpentine Receptor, class H family member (srh-239) [Caenorhabditis elegans] 1.0E-124
blast NP_504982 Serpentine Receptor, class H family member (srh-234) [Caenorhabditis elegans] gb|AAG24047.2| Serpentine receptor, class h protein 234 [Caenorhabditis elegans] 1.0E-106
blast AAB52311 Serpentine receptor, class h protein 231 [Caenorhabditis elegans] ref|NP_504875.2| Serpentine Receptor, class H family member (srh-231) [Caenorhabditis elegans] 2.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.4E-56
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 1.2E-49
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.0E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504875.2 8 15-37,58-80,90-112,133-152,178-200,207-224,239-261,268-290
C03G6.11 8 15-37,58-80,90-112,133-152,178-200,207-224,239-261,268-290
SNAP00000031550 3 13-35,75-97,104-126
GENEFINDER00000031566 7 9-31,46-68,89-108,134-156,163-180,195-217,224-246
Sequence
Target Sequence 
>C. ELEGANS:191551_AT
gctacaatgcatcccggaattgcctaaaaataatcgtcctctttttgtaattgctgtaga
attaccgcttattgctgctacaataggtgttggagcacttataccgacaattgaatgtgg
aacgtttttgcttttgaattgttataatttgatatatactagctcgagtggaatttccag
acatacagttaagatgcaacatcgattagttttggcactaataattcagtcatccataac
tttcatcctttttctgatcccgatcagcatgataattctgttcgtatattttcgttatca
gaaccaaatattcaacaacttaatattcgtttccttagctatccatggaattgcctcaac
tcttattatggtgtttgttcatagcccatatcgagatttcgcgttctccccaatctactg
gtttaccaagaaaccgccgattgtgagagttctgccatcggttttgttgtcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTACAATGCATCCCGGAATTGCCT 236 303 588 Antisense
ATCGTCCTCTTTTTGTAATTGCTGT 570 35 620 Antisense
AGAATTACCGCTTATTGCTGCTACA 33 77 645 Antisense
GGTGTTGGAGCACTTATACCGACAA 154 501 673 Antisense
GAATGTGGAACGTTTTTGCTTTTGA 310 333 700 Antisense
ATCCATAACTTTCATCCTTTTTCTG 455 39 819 Antisense
AATATTCGTTTCCTTAGCTATCCAT 88 175 909 Antisense
GCTATCCATGGAATTGCCTCAACTC 21 305 925 Antisense
TTCTCCCCAATCTACTGGTTTACCA 224 693 991 Antisense
AACCGCCGATTGTGAGAGTTCTGCC 351 147 1019 Antisense
GTTCTGCCATCGGTTTTGTTGTCGA 454 443 1036 Antisense
Sequence Source Affymetrix Proprietary Database