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[191550_at] UDP-glucuronosyltransferase

Description F56B3.7 /REP_DB=WormBase Gene ID /WP=CE23781 /TR=O45109 /GB=AAK29830.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster 6grp_total > 98      4grp_total > 03      6grp_cgc > 79      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 707
1 2 3 4 range
A 172.6
(-1)
P 		71.5
(-3)
A 		116.7
(-2.1)
A 		371.8
(3)
P 		300
B 113.9
(-2.2)
A 		103.7
(-2.3)
A 		37.8
(-3)
A 		619.4
(3)
P 		582
C 147.5
(-2.4)
A 		77.5
(-3)
A 		133.1
(-2.5)
A 		744.9
(3)
P 		667
avr 144.7
(-2.3) 		84.2
(-3) 		95.9
(-2.9) 		578.7
(3) 		495

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 227
1 2 3 4 5 6 range
A 131.8
(-1.6)
P 		142.8
(-1.2)
P 		82.2
(-3)
A 		143.7
(-1.2)
P 		258.2
(2.1)
P 		289.1
(3)
P 		207
B 115.5
(-2.8)
A 		111.1
(-3)
A 		111.8
(-3)
M 		169.2
(-1)
P 		286.3
(3)
P 		262.2
(2.2)
P 		175
C 87.8
(-3)
A 		89.4
(-3)
M 		150.2
(-1.3)
A 		133.2
(-1.8)
A 		268.7
(1.9)
P 		309.4
(3)
P 		222
avr 111.7
(-3) 		114.4
(-2.9) 		114.7
(-2.9) 		148.7
(-1.7) 		271.1
(2.5) 		286.9
(3) 		175
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 62.8
(3)
P 		15.5
(-3)
A 		30.5
(-1.1)
A 		54.4
(1.9)
P 		47
B 36.3
(-1.7)
A 		25.6
(-2.2)
A 		8.8
(-3)
A 		132
(3)
P 		123
C 48.8
(-1.5)
A 		22.3
(-3)
A 		46.4
(-1.6)
A 		125.6
(3)
P 		103
avr 49.3
(-1) 		21.1
(-3) 		28.6
(-2.5) 		104
(3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 24.3
(-2.4)
P 		50.8
(0.3)
P 		17.9
(-3)
A 		36.5
(-1.1)
P 		77.9
(3)
P 		70.4
(2.3)
P 		60
B 40.2
(-2.1)
A 		37
(-2.3)
A 		27.1
(-3)
M 		44.8
(-1.8)
P 		116.3
(3)
P 		97.8
(1.8)
P 		89
C 32.5
(-2.6)
A 		27.3
(-3)
M 		38.2
(-2.1)
A 		26.8
(-3)
A 		87
(1.7)
P 		103.6
(3)
P 		77
avr 32.3
(-2.6) 		38.4
(-2) 		27.7
(-3) 		36
(-2.2) 		93.7
(3) 		90.6
(2.7) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191550_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10467
Sequence Type Exemplar sequence
Representative Public ID F56B3.7 NCBI
Target Description F56B3.7 /REP_DB=WormBase Gene ID /WP=CE23781 /TR=O45109 /GB=AAK29830.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067587(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067587 NCBI Caenorhabditis elegans F56B3.7 (UDP-glucuronosyltransferase) mRNA, complete cds. 11/11 None
GENEFINDER00000041574 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:778817:784121:1 11/11 None
F56B3.7 ENSEMBL cdna:known chromosome:CEL140:IV:778784:784121:1 gene:F56B3.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041566 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:778789-784127(+) 100.0 100.0
Public Domain and Genome References
Gene Title UDP-glucuronosyltransferase
Gene Symbol ugt-52
Ensembl F56B3.7
Entrez Gene 176904 Entrez gene
SwissProt O45109 EMBL-EBI
WormBase CE23781 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1638330_AT Dorothy dm
DROSGENOME1:145725_AT Dorothy dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK29830 Udp-glucuronosyltransferase protein 52 [Caenorhabditis elegans] ref|NP_499988.1| F56B3.7 [Caenorhabditis elegans] 0.0
blast H88632 protein F56B3.7 [imported] - Caenorhabditis elegans 0.0
blast CAE56262 Hypothetical protein CBG23906 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.8E-35
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.8E-35
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499988.1 1 502-524
F56B3.7 1 502-524
GENEFINDER00000041574 2 7-29,491-513
Sequence
Target Sequence 
>C. ELEGANS:191550_AT
gatggggacgagcagatcttcgcgaacacaactaacctgagacttctcaaatggctcccg
cagactgatttgttgaacgacgctcgcaccaaggccttcatctcgcacgtcgggctgaac
tcctacctggaatcctcctacgcgggggttccgattcttgcagttcccctgttcgcggat
caacctcacaatgcgttctcggggatgtcaattgggacaacttatatgctggataagaca
cggttgactaccccgaacattgtgaagggattggaggcagttctgtatgattcgagctac
acccttaacgccaaacggatttcaaaaatgctccatgaacgtccaaacccgcccaagaaa
attttcgttgagtggatcgaatttgcctcccgaaaccccctacttcatcggaatctcaac
cttatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGGGACGAGCAGATCTTCGCGA 553 407 1051 Antisense
ATCTTCGCGAACACAACTAACCTGA 485 29 1066 Antisense
CTGAGACTTCTCAAATGGCTCCCGC 644 237 1087 Antisense
GGCTCCCGCAGACTGATTTGTTGAA 176 539 1103 Antisense
ATTTGTTGAACGACGCTCGCACCAA 128 17 1118 Antisense
GTTCGCGGATCAACCTCACAATGCG 673 441 1221 Antisense
CAATGCGTTCTCGGGGATGTCAATT 294 181 1239 Antisense
TATGATTCGAGCTACACCCTTAACG 99 657 1336 Antisense
AAAATGCTCCATGAACGTCCAAACC 160 131 1375 Antisense
TGAGTGGATCGAATTTGCCTCCCGA 709 567 1419 Antisense
ACTTCATCGGAATCTCAACCTTATT 364 103 1452 Antisense
Sequence Source Affymetrix Proprietary Database