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[191549_at] UDP glucuronosyltransferase

Description F31F4.7 /REP_DB=WormBase Gene ID /WP=CE09827 /TR=O17123 /GB=AAG24089.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=UDP glucuronosyltransferase
Cluster 6grp_total > 05      4grp_total > 39      6grp_cgc > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 111.1
(3)
A 		30.9
(-1.6)
A 		6.7
(-3)
A 		65.7
(0.4)
A 		104
B 69.5
(2.1)
A 		55.3
(0.9)
A 		80.7
(3)
A 		6.9
(-3)
A 		74
C 108.9
(3)
A 		18.7
(-3)
A 		60.4
(-0.2)
A 		85.2
(1.4)
A 		90
avr 96.5
(3) 		35
(-3) 		49.3
(-1.6) 		52.6
(-1.3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 27
(-0.7)
A 		64.8
(3)
A 		12.1
(-2.2)
A 		10.1
(-2.4)
A 		9.9
(-2.4)
A 		4.3
(-3)
A 		61
B 34.7
(0.3)
A 		14.3
(-2.1)
A 		34.2
(0.2)
A 		16.8
(-1.8)
A 		57.9
(3)
A 		6.5
(-3)
A 		51
C 88.7
(3)
A 		67.2
(1.4)
A 		16.2
(-2.3)
A 		11.6
(-2.6)
A 		7.2
(-2.9)
A 		5.9
(-3)
A 		83
avr 50.1
(3) 		48.8
(2.8) 		20.8
(-1) 		12.8
(-2) 		25
(-0.4) 		5.6
(-3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 40.5
(3)
A 		6.7
(-2.2)
A 		1.7
(-3)
A 		9.6
(-1.8)
A 		39
B 22.2
(3)
A 		13.6
(0.5)
A 		18.7
(2)
A 		1.5
(-3)
A 		21
C 36
(3)
A 		5.4
(-3)
A 		21
(0.1)
A 		14.4
(-1.2)
A 		31
avr 32.9
(3) 		8.6
(-3) 		13.8
(-1.7) 		8.5
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 5
(-1.9)
A 		23
(3)
A 		2.6
(-2.6)
A 		2.6
(-2.6)
A 		3
(-2.5)
A 		1.1
(-3)
A 		22
B 12.1
(-0.2)
A 		4.7
(-2.3)
A 		8.3
(-1.3)
A 		4.5
(-2.4)
A 		23.5
(3)
A 		2.4
(-3)
A 		21
C 32.9
(3)
A 		20.5
(0.6)
A 		4.1
(-2.6)
A 		2.3
(-2.9)
A 		2.3
(-2.9)
A 		2
(-3)
A 		31
avr 16.7
(3) 		16.1
(2.8) 		5
(-1.7) 		3.1
(-2.5) 		9.6
(0.1) 		1.8
(-3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191549_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15235
Sequence Type Exemplar sequence
Representative Public ID F31F4.7 NCBI
Target Description F31F4.7 /REP_DB=WormBase Gene ID /WP=CE09827 /TR=O17123 /GB=AAG24089.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=UDP glucuronosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070877
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000012359 ENSEMBL cdna:SNAP chromosome:CEL140:V:647154:649470:1 None
F31F4.7 ENSEMBL cdna:known chromosome:CEL140:V:647017:649570:1 gene:F31F4.7 None
NM_070877 NCBI Caenorhabditis elegans F31F4.7 (F31F4.7) mRNA, complete cds. None
GENEFINDER00000012376 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:647049:649470:1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:647048-650618(+) 96.97 100.0
Public Domain and Genome References
Gene Title UDP glucuronosyltransferase
Gene Symbol ugt-42
Ensembl F31F4.7
Entrez Gene 185168 Entrez gene
SwissProt O17123 EMBL-EBI
WormBase CE36837 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503278 F31F4.7 [Caenorhabditis elegans] gb|AAG24089.2| Hypothetical protein F31F4.7 [Caenorhabditis elegans] 0.0
blast NP_504818 F10D2.11 [Caenorhabditis elegans] gb|AAC48241.2| Hypothetical protein F10D2.11 [Caenorhabditis elegans] 0.0
blast CAE72012 Hypothetical protein CBG19093 [Caenorhabditis briggsae] 0.0
blast NP_503278 F31F4.7 [Caenorhabditis elegans] gb|AAG24089.2| Hypothetical protein F31F4.7 [Caenorhabditis elegans] 1.0E-151
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 7.0E-13
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503278.2 2 7-29,491-513
F31F4.7 2 7-29,491-513
SNAP00000012359 1 363-385
GENEFINDER00000012376 2 7-29,491-513
Sequence
Target Sequence 
>C. ELEGANS:191549_AT
ctccgcattcttcactcacggaggtctaggaagtgttaatgagttaagctatcttggtaa
acctgcgctcctgtgccctctgtttgctgatcaagttcgcaactcaaaaatgctttctcg
ccacaatggatcaatcgaaatctctaagttcaatctggaaagctataatactttgcgatc
tgctttgcatagtatacttttcgatgaaagttatgctgaaaacgcagagaaattggccaa
gaagctggaatttcagccagcaaaaccaaaggaattgtttgtgagacatgcagagtttgc
agctcgatttggcgaacaaccggcccttgattgtaatcttcgaactatgggatttgccac
ttatcatttattagatgttgttgtatgtttgacgagtttcgttgtactagtgatactttc
gctagtgatttttttgaaactttgtgaatttatgttatcaactatgatctttcatttgag
ctggcaatcgggatggatgttttgtatagttggtgtatattccccatttgatacaattat
gtttatgatgattgtgtcagagtatagatccttgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCGCATTCTTCACTCACGGAGGT 259 235 1116 Antisense
AGCTATCTTGGTAAACCTGCGCTCC 317 79 1162 Antisense
TGCCCTCTGTTTGCTGATCAAGTTC 388 585 1189 Antisense
GGAATTTCAGCCAGCAAAACCAAAG 106 525 1362 Antisense
GCTCGATTTGGCGAACAACCGGCCC 690 297 1417 Antisense
CAACCGGCCCTTGATTGTAATCTTC 683 185 1432 Antisense
ATGGGATTTGCCACTTATCATTTAT 224 51 1462 Antisense
CGTTGTACTAGTGATACTTTCGCTA 440 245 1515 Antisense
TTGAGCTGGCAATCGGGATGGATGT 225 705 1591 Antisense
AGTTGGTGTATATTCCCCATTTGAT 307 65 1623 Antisense
TTGTGTCAGAGTATAGATCCTTGCT 387 705 1667 Antisense
Sequence Source Affymetrix Proprietary Database