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[191546_s_at]

Description C47D12.6 /REP_DB=WormBase Gene ID /WP=CE05434 /TR=SW:P52709 /GB=CAA93762.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=threonyl-tRNA synthetase
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 29      4grp_highest_8_8 > 25      4grp_high_8_8 > 60      6grp_highest_nonorm > 76      6grp_total > 27      4grp_total > 60      6grp_highest_sub > Cu      6grp_cgc > 05      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1332
1 2 3 4 range
A 2086.1
(2.4)
P 		2177.9
(3)
P 		2125.3
(2.7)
P 		1231.4
(-3)
P 		947
B 1930.2
(0.8)
P 		2224.6
(2.5)
P 		2309.4
(3)
P 		1295.3
(-3)
P 		1014
C 2071.9
(1.1)
P 		2135.6
(1.3)
P 		2502.2
(3)
P 		1170.7
(-3)
P 		1332
avr 2029.4
(1.4) 		2179.4
(2.3) 		2312.3
(3) 		1232.5
(-3) 		1080

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 932
1 2 3 4 5 6 range
A 1088.2
(-1.3)
P 		1354.4
(1.9)
P 		1120.5
(-0.9)
P 		948.9
(-3)
P 		1146.9
(-0.6)
P 		1448
(3)
P 		499
B 1471.5
(3)
P 		1308.8
(0.8)
P 		1032.8
(-3)
P 		1160.9
(-1.2)
P 		1029.3
(-3)
P 		1166.7
(-1.1)
P 		442
C 1691
(3)
P 		1091.5
(-0.9)
P 		1181.5
(-0.3)
P 		759.1
(-3)
P 		1205.7
(-0.1)
P 		1140.9
(-0.5)
P 		932
avr 1416.9
(3) 		1251.6
(0.8) 		1111.6
(-1) 		956.3
(-3) 		1127.3
(-0.8) 		1251.9
(0.9) 		461
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 692
1 2 3 4 range
A 759.5
(3)
P 		472.8
(0)
P 		555.6
(0.9)
P 		180.3
(-3)
P 		579
B 615.5
(3)
P 		549.4
(1.8)
P 		535.1
(1.6)
P 		276
(-3)
P 		340
C 685.9
(1.3)
P 		614
(0.7)
P 		872.1
(3)
P 		197.4
(-3)
P 		675
avr 687
(3) 		545.4
(1.2) 		654.3
(2.6) 		217.9
(-3) 		469

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 474
1 2 3 4 5 6 range
A 200.6
(-3)
P 		481.7
(3)
P 		244
(-2.1)
P 		240.7
(-2.1)
P 		346.1
(0.1)
P 		352.5
(0.2)
P 		281
B 512
(3)
P 		435.6
(1.2)
P 		250.8
(-3)
P 		307.5
(-1.7)
P 		418.2
(0.8)
P 		435
(1.2)
P 		261
C 626.8
(3)
P 		333
(-0.7)
P 		300.7
(-1.1)
P 		152.7
(-3)
P 		390.1
(0)
P 		381.9
(-0.1)
P 		474
avr 446.5
(3) 		416.8
(2.2) 		265.2
(-2.1) 		233.6
(-3) 		384.8
(1.3) 		389.8
(1.4) 		213
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191546_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3085
Sequence Type Exemplar sequence
Representative Public ID C47D12.6 NCBI
Target Description C47D12.6 /REP_DB=WormBase Gene ID /WP=CE05434 /TR=SW:P52709 /GB=CAA93762.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=threonyl-tRNA synthetase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026863(11), NM_001026862(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026863 NCBI Caenorhabditis elegans Threonyl tRNA Synthetase family member (trs-1) (trs-1) mRNA, complete cds. 11/11 None
NM_001026862 NCBI Caenorhabditis elegans Threonyl tRNA Synthetase family member (trs-1) (trs-1) mRNA, complete cds. 11/11 None
SNAP00000023908 ENSEMBL cdna:SNAP chromosome:CEL140:II:11691451:11693979:-1 11/11 None
GENEFINDER00000023917 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11691451:11693979:-1 11/11 None
C47D12.6b.5 ENSEMBL cdna:known chromosome:CEL140:II:11690775:11694198:-1 gene:C47D12.6 11/11 None
C47D12.6b.3 ENSEMBL cdna:known chromosome:CEL140:II:11691232:11695562:-1 gene:C47D12.6 11/11 None
C47D12.6b.1 ENSEMBL cdna:known chromosome:CEL140:II:11691232:11693982:-1 gene:C47D12.6 11/11 None
C47D12.6b.2 ENSEMBL cdna:known chromosome:CEL140:II:11691232:11694198:-1 gene:C47D12.6 11/11 None
C47D12.6b.4 ENSEMBL cdna:known chromosome:CEL140:II:11691233:11693984:-1 gene:C47D12.6 11/11 None
C47D12.6a ENSEMBL cdna:known chromosome:CEL140:II:11691451:11694168:-1 gene:C47D12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11691447-11694165(-) 100.0 100.0
Public Domain and Genome References
Ensembl C47D12.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD89723 Hypothetical protein C47D12.6b [Caenorhabditis elegans] ref|NP_001022034.1| Threonyl tRNA Synthetase family member (trs-1) [Caenorhabditis elegans] 0.0
blast CAA93762 Hypothetical protein C47D12.6a [Caenorhabditis elegans] ref|NP_001022033.1| Threonyl tRNA Synthetase family member (trs-1) [Caenorhabditis elegans] sp|P52709|SYTC_CAEEL Threonyl-tRNA synthetase, cytoplasmic (Threonine--tRNA ligase) (ThrRS) 0.0
blast CAE59712 Hypothetical protein CBG03144 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004154 EMBL-EBI Anticodon binding domain 1.0E-27
Pfam IPR002314 EMBL-EBI tRNA synthetases, class-II (G, H, P and S) 4.2E-57
Pfam IPR004095 EMBL-EBI TGS domain 7.7E-23
Pfam IPR004154 EMBL-EBI Anticodon binding domain 1.0E-27
Pfam IPR002314 EMBL-EBI tRNA synthetases, class-II (G, H, P and S) 4.2E-57
Pfam IPR004095 EMBL-EBI TGS domain 7.7E-23
Sequence
Target Sequence 
>C. ELEGANS:191546_S_AT
tcaccaatgcgctcaacgcttcaggcagaaaatgggtgttgaacccgggagatggagcat
tctacggaccgaaaatcgatatcaccattcaagatgctctcaagagaaacttccagtgcg
ccacaattcagcttgacttccaacttccgaatcaatttgatctttcctatttcgacgaga
agggagaaaagcagagaccagtcatgattcatcgtgctgttcttggatcagttgagcgga
tgacagctattctcactgaaagttatggaggaaaatggccattctggctctcaccaaggc
aatgtaaaatcatcactgttcacgagtcagtcagagactatgcaaatgacgtcaaaaagc
agatcttcgaggccggatttgagattgagtatgaggagaattgtggtgacacgatgaata
agcaggtccgaaaggcccagcttgcccagttcaacttcattctcgtcattgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACCAATGCGCTCAACGCTTCAGG 562 625 1568 Antisense
GGAGATGGAGCATTCTACGGACCGA 210 519 1615 Antisense
TCCAGTGCGCCACAATTCAGCTTGA 679 589 1679 Antisense
GCTTGACTTCCAACTTCCGAATCAA 452 307 1698 Antisense
GAATCAATTTGATCTTTCCTATTTC 173 327 1716 Antisense
CATGATTCATCGTGCTGTTCTTGGA 683 209 1770 Antisense
GAGCGGATGACAGCTATTCTCACTG 681 385 1801 Antisense
GAAAATGGCCATTCTGGCTCTCACC 39 355 1838 Antisense
GCAGATCTTCGAGGCCGGATTTGAG 113 313 1926 Antisense
TAAGCAGGTCCGAAAGGCCCAGCTT 196 637 1986 Antisense
GTTCAACTTCATTCTCGTCATTGGA 574 445 2016 Antisense
Sequence Source Affymetrix Proprietary Database