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[191543_at] salt-stress induced peptide

Description C04G6.5 /REP_DB=WormBase Gene ID /WP=CE06766 /TR=Q17638 /GB=AAA98012.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=salt-stress induced peptide
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 33      4grp_highest_8_8 > 43      4grp_high_8_8 > 32      6grp_highest_nonorm > 62      6grp_total > 31      4grp_total > 55      6grp_highest_sub > 04      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 740
1 2 3 4 range
A 970.8
(3)
P 		296.6
(-3)
P 		451.4
(-1.6)
P 		558.2
(-0.7)
P 		674
B 1036.2
(3)
P 		460.4
(-2.1)
P 		793.6
(0.9)
P 		355.7
(-3)
P 		681
C 890.9
(3)
P 		572.7
(-1.2)
P 		433.8
(-3)
P 		487.3
(-2.3)
P 		457
avr 966
(3) 		443.2
(-3) 		559.6
(-1.7) 		467.1
(-2.7) 		523

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 646
1 2 3 4 5 6 range
A 487.6
(0)
P 		391.3
(-1)
P 		708.6
(2.5)
P 		757.4
(3)
P 		464.4
(-0.2)
P 		213.9
(-3)
P 		544
B 460.2
(0.5)
P 		544.8
(3)
P 		390.5
(-1.6)
P 		502.6
(1.7)
P 		526.2
(2.4)
P 		345.4
(-3)
P 		199
C 446.2
(-1.1)
P 		859.7
(3)
P 		426.8
(-1.3)
P 		365.2
(-1.9)
P 		478.5
(-0.8)
P 		251.2
(-3)
P 		609
avr 464.7
(0.6) 		598.6
(3) 		508.6
(1.4) 		541.7
(2) 		489.7
(1) 		270.2
(-3) 		328
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 289
1 2 3 4 range
A 353.5
(3)
P 		64.4
(-3)
P 		118
(-1.9)
P 		81.7
(-2.6)
P 		289
B 330.4
(3)
P 		113.7
(-2.1)
P 		183.9
(-0.5)
P 		75.8
(-3)
P 		255
C 294.9
(3)
P 		164.7
(-0.7)
P 		151.2
(-1.1)
P 		82.2
(-3)
P 		213
avr 326.3
(3) 		114.3
(-2.2) 		151
(-1.3) 		79.9
(-3) 		246

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 210
1 2 3 4 5 6 range
A 89.9
(-1.4)
P 		139.2
(0.7)
P 		154.3
(1.4)
P 		192.1
(3)
P 		140.1
(0.8)
P 		52.1
(-3)
P 		140
B 160.1
(0.3)
P 		181.4
(1.4)
P 		94.8
(-3)
P 		133.1
(-1.1)
P 		213.8
(3)
P 		128.8
(-1.3)
P 		119
C 165.4
(-0.1)
P 		262.3
(3)
P 		108.6
(-1.9)
P 		73.4
(-3)
P 		154.8
(-0.4)
P 		84.1
(-2.7)
P 		189
avr 138.5
(-0.2) 		194.3
(3) 		119.2
(-1.3) 		132.9
(-0.5) 		169.6
(1.6) 		88.3
(-3) 		106
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191543_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4378
Sequence Type Exemplar sequence
Representative Public ID C04G6.5 NCBI
Target Description C04G6.5 /REP_DB=WormBase Gene ID /WP=CE06766 /TR=Q17638 /GB=AAA98012.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=salt-stress induced peptide
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062539(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062539 NCBI Caenorhabditis elegans C04G6.5 (C04G6.5) mRNA, complete cds. 11/11 None
SNAP00000008307 ENSEMBL cdna:SNAP chromosome:CEL140:II:5085802:5086040:1 11/11 None
C04G6.5 ENSEMBL cdna:known chromosome:CEL140:II:5085774:5086104:1 gene:C04G6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5085799-5086038(+) 100.0 100.0
Public Domain and Genome References
Gene Title salt-stress induced peptide
Ensembl C04G6.5
Entrez Gene 173877 Entrez gene
SwissProt Q17638 EMBL-EBI
WormBase CE06766 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA98012 Hypothetical protein C04G6.5 [Caenorhabditis elegans] ref|NP_494940.1| C04G6.5 [Caenorhabditis elegans] sp|Q17638|YAM5_CAEEL Hypothetical UPF0057 protein C04G6.5 in chromosome II 1.0E-29
blast CAE59040 Hypothetical protein CBG02321 [Caenorhabditis briggsae] 1.0E-24
blast CAE68482 Hypothetical protein CBG14284 [Caenorhabditis briggsae] 8.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR000612 EMBL-EBI Protein of unknown function UPF0057 1.4E-26
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494940.1 2 7-24,34-56
C04G6.5 2 7-24,34-56
SNAP00000008307 2 7-24,34-56
Sequence
Target Sequence 
>C. ELEGANS:191543_AT
agatgctgatgttattattgaggtcattctttgcattttcctcccgccattagcaatctg
gtggcacacaaaagaatgcgatatcaatgtgctcattgatattatattttgcctgctctt
ctggcttccaggaatactttac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATGCTGATGTTATTATTGAGGTC 393 67 21 Antisense
TATTGAGGTCATTCTTTGCATTTTC 368 663 36 Antisense
GAGGTCATTCTTTGCATTTTCCTCC 335 403 40 Antisense
CTCCCGCCATTAGCAATCTGGTGGC 547 233 61 Antisense
CATTAGCAATCTGGTGGCACACAAA 555 215 68 Antisense
ATCTGGTGGCACACAAAAGAATGCG 684 31 76 Antisense
GAATGCGATATCAATGTGCTCATTG 303 329 94 Antisense
GTGCTCATTGATATTATATTTTGCC 616 479 109 Antisense
TTATATTTTGCCTGCTCTTCTGGCT 171 679 122 Antisense
CTGCTCTTCTGGCTTCCAGGAATAC 527 237 133 Antisense
CTTCTGGCTTCCAGGAATACTTTAC 132 219 138 Antisense
Sequence Source Affymetrix Proprietary Database