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[191538_at] 7TM chemoreceptor, str family

Description F59E11.16 /REP_DB=WormBase Gene ID /WP=CE25031 /GEN=str-87 /TR=Q9GUE1 /GB=AAG24149.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 06      4grp_total > 14      6grp_cgc > 22      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 8.6
(-2.5)
A 		4.8
(-3)
A 		5.5
(-2.9)
A 		54.4
(3)
A 		50
B 37.5
(3)
A 		9.5
(-2)
A 		4.2
(-3)
A 		10.9
(-1.8)
A 		33
C 28.4
(1.2)
A 		6.9
(-2.8)
A 		5.6
(-3)
A 		38.1
(3)
A 		33
avr 24.8
(1) 		7.1
(-2.6) 		5.1
(-3) 		34.5
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 93
(3)
A 		53.3
(0.2)
A 		44.7
(-0.4)
A 		26.3
(-1.7)
A 		51.9
(0.1)
A 		7.9
(-3)
A 		85
B 102.8
(3)
A 		47.6
(-1.3)
A 		30.5
(-2.6)
A 		40.2
(-1.9)
A 		26.5
(-2.9)
A 		25.7
(-3)
A 		77
C 76.5
(3)
P 		73.1
(2.7)
A 		30
(-1.4)
A 		29.9
(-1.4)
A 		13.7
(-2.9)
A 		12.9
(-3)
A 		64
avr 90.8
(3) 		58
(0.4) 		35.1
(-1.4) 		32.1
(-1.7) 		30.7
(-1.8) 		15.5
(-3) 		75
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.1
(-1.2)
A 		1
(-3)
A 		1.4
(-2.7)
A 		8
(3)
A 		7
B 12
(3)
A 		2.4
(-2.2)
A 		1
(-3)
A 		2.3
(-2.3)
A 		11
C 9.4
(3)
A 		2
(-2.9)
A 		1.9
(-3)
A 		6.4
(0.6)
A 		8
avr 8.2
(3) 		1.8
(-2.6) 		1.4
(-3) 		5.6
(0.7) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 17.1
(2.4)
A 		18.9
(3)
A 		9.7
(-0.2)
A 		6.7
(-1.3)
A 		15.7
(1.9)
A 		1.9
(-3)
A 		17
B 35.8
(3)
A 		15.9
(-1.2)
A 		7.4
(-3)
A 		10.6
(-2.3)
A 		10.8
(-2.3)
A 		9.6
(-2.5)
A 		28
C 28.3
(3)
P 		22.3
(1.5)
A 		7.6
(-2.2)
A 		6
(-2.6)
A 		4.4
(-3)
A 		4.3
(-3)
A 		24
avr 27.1
(3) 		19
(0.8) 		8.2
(-2.2) 		7.8
(-2.3) 		10.3
(-1.6) 		5.3
(-3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191538_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12496
Sequence Type Exemplar sequence
Representative Public ID F59E11.16 NCBI
Target Description F59E11.16 /REP_DB=WormBase Gene ID /WP=CE25031 /GEN=str-87 /TR=Q9GUE1 /GB=AAG24149.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072921(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072921 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-87) (str-87) mRNA, complete cds. 11/11 None
SNAP00000037881 ENSEMBL cdna:SNAP chromosome:CEL140:V:8989280:8990551:-1 11/11 None
GENEFINDER00000037892 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8989252:8990356:-1 11/11 None
F59E11.16 ENSEMBL cdna:known chromosome:CEL140:V:8989280:8990551:-1 gene:F59E11.16 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8989280-8990552(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-87
Ensembl F59E11.16
Entrez Gene 191994 Entrez gene
SwissProt Q9GUE1 EMBL-EBI
WormBase CE25031 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24149 Seven tm receptor protein 87 [Caenorhabditis elegans] ref|NP_505322.1| Seven TM Receptor family member (str-87) [Caenorhabditis elegans] 0.0
blast T32119 hypothetical protein F59E11.16 - Caenorhabditis elegans 0.0
blast AAG24149 Seven tm receptor protein 87 [Caenorhabditis elegans] ref|NP_505322.1| Seven TM Receptor family member (str-87) [Caenorhabditis elegans] 1.0E-147
blast T32119 hypothetical protein F59E11.16 - Caenorhabditis elegans 1.0E-144
blast CAB04639 Hypothetical protein R08H2.2 [Caenorhabditis elegans] ref|NP_506821.1| Seven TM Receptor family member (str-88) [Caenorhabditis elegans] 1.0E-131
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.4E-22
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.0E-20
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.6E-22
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.0E-20
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505322.1 7 15-34,46-68,88-110,131-150,203-225,251-273,288-307
F59E11.16 7 15-34,46-68,88-110,131-150,203-225,251-273,288-307
SNAP00000037881 7 15-34,46-68,88-110,131-150,203-225,251-273,288-307
GENEFINDER00000037892 5 23-45,66-85,138-160,186-208,223-242
Sequence
Target Sequence 
>C. ELEGANS:191538_AT
taatgctctgggtggttggttcgacgatttctggtttttcaatggcttatttaaaatact
ggaccttcccagaacgtgaacatctaacaaatgaactccgcgaagattttctacaatact
ttgctttaacaatggaagaaatagtgtataacggaccaaactattatgtttgtaaaaagt
tcaatgactgcaagaagcctcgagcagattggattacgatgttcattctctgtggtggtc
taattttttctgtctctacgatgtgcttctgcgggtacagttgttgtaaaaaacttggcg
agcacaaaaatcgtttgagttctcgcaccgccaaccttcaaaaacaactaatggcagcat
tgattattcaatctgtcattcccataatcttcatgtacataccagtttttcttctcttca
tgactccaatgttcagagtcggatttggtccttatgataatatcgctatggcgactcttg
caatctacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATGCTCTGGGTGGTTGGTTCGAC 672 625 410 Antisense
TGGTTCGACGATTTCTGGTTTTTCA 486 551 426 Antisense
GACCTTCCCAGAACGTGAACATCTA 502 383 471 Antisense
GAACTCCGCGAAGATTTTCTACAAT 545 349 502 Antisense
GATTACGATGTTCATTCTCTGTGGT 118 431 621 Antisense
GTGGTCTAATTTTTTCTGTCTCTAC 224 489 644 Antisense
TACGATGTGCTTCTGCGGGTACAGT 658 647 666 Antisense
AAAATCGTTTGAGTTCTCGCACCGC 628 131 716 Antisense
ATTCAATCTGTCATTCCCATAATCT 94 13 775 Antisense
GTACATACCAGTTTTTCTTCTCTTC 169 461 804 Antisense
GCTATGGCGACTCTTGCAATCTACC 199 303 874 Antisense
Sequence Source Affymetrix Proprietary Database