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[191537_at]

Description F14D12.6 /REP_DB=WormBase Gene ID /WP=CE04395 /TR=Q19449 /GB=AAA82337.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster 6grp_high1_10_10 > 79      4grp_high_8_8 > 02      6grp_total > 89      4grp_total > 14      6grp_cgc > 29      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 228
1 2 3 4 range
A 203.6
(1.6)
P 		72.7
(-3)
A 		107
(-1.8)
P 		244.2
(3)
P 		172
B 220
(0.6)
P 		106.7
(-2.7)
P 		97.2
(-3)
M 		300.6
(3)
P 		203
C 244.7
(2.3)
P 		123.5
(-2.1)
P 		97.2
(-3)
A 		263.6
(3)
P 		166
avr 222.8
(1.3) 		101
(-3) 		100.5
(-3) 		269.5
(3) 		169

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 195.1
(1.7)
P 		175.4
(0.8)
P 		117.2
(-2)
A 		94.9
(-3)
A 		199.1
(1.9)
P 		223.7
(3)
P 		129
B 161.3
(-1.1)
P 		201.8
(1.6)
P 		171.9
(-0.4)
P 		131.5
(-3)
P 		214.6
(2.4)
P 		224.2
(3)
P 		93
C 127.6
(-3)
P 		199
(0.5)
P 		139
(-2.4)
A 		142.4
(-2.3)
P 		192.7
(0.2)
P 		249
(3)
P 		121
avr 161.3
(-0.9) 		192.1
(0.8) 		142.7
(-1.9) 		122.9
(-3) 		202.1
(1.3) 		232.3
(3) 		109
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 74.1
(3)
P 		15.8
(-3)
A 		28
(-1.7)
P 		35.7
(-1)
P 		58
B 70.2
(3)
P 		26.4
(-2.5)
P 		22.5
(-3)
M 		64.1
(2.2)
P 		48
C 81
(3)
P 		35.5
(-2.8)
P 		33.9
(-3)
A 		44.4
(-1.7)
P 		47
avr 75.1
(3) 		25.9
(-3) 		28.1
(-2.7) 		48.1
(-0.3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 36
(-1.1)
P 		62.4
(3)
P 		25.5
(-2.8)
A 		24.1
(-3)
A 		60.1
(2.6)
P 		54.5
(1.8)
P 		38
B 56.1
(-0.6)
P 		67.2
(0.7)
P 		41.7
(-2.2)
P 		34.8
(-3)
P 		87.2
(3)
P 		83.6
(2.6)
P 		52
C 47.3
(-1)
P 		60.7
(0.5)
P 		35.4
(-2.3)
A 		28.6
(-3)
P 		62.4
(0.7)
P 		83.4
(3)
P 		55
avr 46.5
(-0.7) 		63.4
(1.6) 		34.2
(-2.3) 		29.2
(-3) 		69.9
(2.5) 		73.8
(3) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191537_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16068
Sequence Type Exemplar sequence
Representative Public ID F14D12.6 NCBI
Target Description F14D12.6 /REP_DB=WormBase Gene ID /WP=CE04395 /TR=Q19449 /GB=AAA82337.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029397(10), NM_001029398(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029397 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-24) (tag-24) mRNA, complete cds. 10/11 None
NM_001029398 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-24) (tag-24) mRNA, complete cds. 10/11 None
SNAP00000023053 ENSEMBL cdna:SNAP chromosome:CEL140:X:5609267:5611178:-1 10/11 None
GENEFINDER00000023057 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5609267:5611178:-1 10/11 None
F14D12.6a ENSEMBL cdna:known chromosome:CEL140:X:5609113:5611208:-1 gene:F14D12.6 10/11 None
F14D12.6b ENSEMBL cdna:known chromosome:CEL140:X:5609267:5611178:-1 gene:F14D12.6 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5609207-5611178(-) 100.0 100.0
Public Domain and Genome References
Ensembl F14D12.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAQ81275 Temporarily assigned gene name protein 24, isoform a [Caenorhabditis elegans] ref|NP_001024568.1| Temporarily Assigned Gene name family member (tag-24) [Caenorhabditis elegans] 0.0
blast AAQ81276 Temporarily assigned gene name protein 24, isoform b [Caenorhabditis elegans] ref|NP_001024569.1| Temporarily Assigned Gene name family member (tag-24) [Caenorhabditis elegans] 0.0
blast CAE68770 Hypothetical protein CBG14708 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 4.8E-94
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 5.7E-94
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024568.1 7 25-47,59-81,96-118,139-161,176-198,323-345,360-379
NP_001024569.1 7 25-47,59-81,96-118,139-161,176-198,325-347,362-381
F14D12.6a 7 25-47,59-81,96-118,139-161,176-198,323-345,360-379
F14D12.6b 7 25-47,59-81,96-118,139-161,176-198,325-347,362-381
SNAP00000023053 7 25-47,59-81,96-118,139-161,176-198,323-345,360-379
GENEFINDER00000023057 7 25-47,59-81,96-118,139-161,176-198,323-345,360-379
Sequence
Target Sequence 
>C. ELEGANS:191537_AT
accatccgtcatagtaggcagcgactgaaggaaacagagaggagagatcatacattgaat
atgttgacaattcgaagcagtactaatgaacgttacaatatggagtacgaacttgaagag
aactccgacccaattgaagatgaaaaagaaaaagtcgttaccaaccgagatatgattaac
aaagtatgttggcagcttcgaaaaatatccgaagaattgccaagacaaggagtcaaggtg
agtattgctcttgacacaaatcataacagcccacctgcatctgatttgactagaaaactg
gaagagaagaagttttgtgagaagcgaaaaaggaagctgaaggcaaaagaacgacaggct
actttgttgcttggaattattttgtcagcgtttattcttagctggctgccattcttttta
atctacgtcattggtgcttttggacatgaagctccaccattggttttcaaattctttttc
tggttgggttactgtaactctggtatcaacccggtgatctacacagtattcaatccgatt
cattcatccactcatggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCATCCGTCATAGTAGGCAGCGAC 320 79 676 Antisense
GAGAACTCCGACCCAATTGAAGATG 55 393 793 Antisense
ACAAATCATAACAGCCCACCTGCAT 588 109 931 Antisense
CCCACCTGCATCTGATTTGACTAGA 325 257 945 Antisense
GAACGACAGGCTACTTTGTTGCTTG 367 347 1024 Antisense
AGCGTTTATTCTTAGCTGGCTGCCA 421 79 1062 Antisense
GGCTGCCATTCTTTTTAATCTACGT 605 539 1079 Antisense
AATCTACGTCATTGGTGCTTTTGGA 65 171 1095 Antisense
GGACATGAAGCTCCACCATTGGTTT 28 525 1117 Antisense
GTAACTCTGGTATCAACCCGGTGAT 240 461 1169 Antisense
CCGATTCATTCATCCACTCATGGAG 610 263 1210 Antisense
Sequence Source Affymetrix Proprietary Database