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[191536_at] 7TM chemoreceptor, str family

Description F59E11.15 /REP_DB=WormBase Gene ID /WP=CE25030 /GEN=str-85 /TR=Q9GUE2 /GB=AAG24150.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 90      4grp_total > 01      6grp_cgc > 96      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 5
(-3)
A 		17.2
(3)
A 		5
(-3)
A 		7.4
(-1.8)
A 		12
B 35.3
(3)
A 		5.2
(-2.9)
A 		14.3
(-1.1)
A 		4.8
(-3)
A 		31
C 3.9
(-3)
A 		14.7
(-2.3)
A 		25.2
(-1.6)
A 		95.1
(3)
A 		91
avr 14.7
(-2.4) 		12.4
(-3) 		14.8
(-2.4) 		35.8
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 4.2
(-3)
A 		5
(-2.6)
A 		5.3
(-2.4)
A 		6.4
(-1.8)
A 		15.3
(3)
A 		9.7
(-0)
A 		11
B 2.3
(-3)
A 		18
(3)
A 		7.4
(-1.1)
A 		8.6
(-0.6)
A 		14.1
(1.5)
A 		10
(-0.1)
A 		16
C 24.6
(-0.1)
A 		19.5
(-0.8)
A 		5
(-3)
A 		45.3
(3)
A 		16.8
(-1.2)
A 		26.5
(0.2)
A 		40
avr 10.4
(-1.1) 		14.2
(0.5) 		5.9
(-3) 		20.1
(3) 		15.4
(1) 		15.4
(1) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 1.8
(-1.4)
A 		3.7
(3)
A 		1.3
(-2.5)
A 		1.1
(-3)
A 		3
B 11.3
(3)
A 		1.3
(-2.8)
A 		3.3
(-1.7)
A 		1
(-3)
A 		10
C 1.3
(-3)
A 		4.2
(-1.8)
A 		8.8
(0.1)
A 		16
(3)
A 		15
avr 4.8
(0.5) 		3.1
(-3) 		4.5
(-0.1) 		6
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.8
(-3)
A 		1.8
(-1.4)
A 		1.2
(-2.4)
A 		1.6
(-1.7)
A 		4.6
(3)
A 		2.4
(-0.5)
A 		4
B 0.8
(-3)
A 		6
(3)
A 		1.8
(-1.8)
A 		2.3
(-1.3)
A 		5.7
(2.7)
A 		3.7
(0.3)
A 		5
C 9.1
(3)
A 		6
(0.6)
A 		1.3
(-3)
A 		9.1
(3)
A 		5.4
(0.2)
A 		8.9
(2.8)
A 		8
avr 3.6
(0.5) 		4.6
(2.1) 		1.4
(-3) 		4.3
(1.6) 		5.2
(3) 		5
(2.7) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191536_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12375
Sequence Type Exemplar sequence
Representative Public ID F59E11.15 NCBI
Target Description F59E11.15 /REP_DB=WormBase Gene ID /WP=CE25030 /GEN=str-85 /TR=Q9GUE2 /GB=AAG24150.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072920(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072920 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-85) (str-85) mRNA, complete cds. 11/11 None
SNAP00000037880 ENSEMBL cdna:SNAP chromosome:CEL140:V:8987247:8988351:-1 10/11 None
GENEFINDER00000037895 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8987111:8988243:-1 11/11 None
F59E11.15 ENSEMBL cdna:known chromosome:CEL140:V:8987111:8988426:-1 gene:F59E11.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8987111-8988427(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-85
Ensembl F59E11.15
Entrez Gene 191992 Entrez gene
SwissProt Q9GUE2 EMBL-EBI
WormBase CE25030 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24150 Seven tm receptor protein 85 [Caenorhabditis elegans] ref|NP_505321.1| Seven TM Receptor family member (str-85) [Caenorhabditis elegans] 0.0
blast T32118 hypothetical protein F59E11.15 - Caenorhabditis elegans 1.0E-180
blast AAG24150 Seven tm receptor protein 85 [Caenorhabditis elegans] ref|NP_505321.1| Seven TM Receptor family member (str-85) [Caenorhabditis elegans] 1.0E-163
blast T32118 hypothetical protein F59E11.15 - Caenorhabditis elegans 1.0E-160
blast AAG24150 Seven tm receptor protein 85 [Caenorhabditis elegans] ref|NP_505321.1| Seven TM Receptor family member (str-85) [Caenorhabditis elegans] 1.0E-159
blast T32118 hypothetical protein F59E11.15 - Caenorhabditis elegans 1.0E-144
blast AAG24151 Seven tm receptor protein 86 [Caenorhabditis elegans] ref|NP_505320.1| Seven TM Receptor family member (str-86) [Caenorhabditis elegans] 1.0E-129
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.2E-5
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.3E-9
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.2E-5
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.1E-8
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.2E-5
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.3E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505321.1 7 10-29,42-64,84-106,127-149,198-220,247-269,279-301
F59E11.15 7 10-29,42-64,84-106,127-149,198-220,247-269,279-301
SNAP00000037880 6 16-38,53-75,95-117,165-187,214-236,246-268
GENEFINDER00000037895 5 24-46,67-89,137-159,186-208,218-240
Sequence
Target Sequence 
>C. ELEGANS:191536_AT
ggatgtgcagcttgtggaatctcgatggtgactgtaaagtattttgcttttccacaaaaa
gagcggctaacaaatgaactgcgagatgacttttcccaatactataacctgactatggaa
gaagttgtttacaatggaccaaattattacaattgtgatgaaaatggaaaatgcgaaata
tcgttagttgactggattacaatgattattttttgttgtggattaatgttctcagttata
atcatgttctgctgtggatatttttgttgtatgaaacttgaaaaaaacaagctgaatgct
agccaccacacagttcaactgcagaaacagctgatgattgctttgatcattcaatcgctc
attccgataactctcatgtacataccaattcttattctctttgtaactccaatgattcgc
attgccgccggtccttatgtcaacattgcgatagctactgtagccatatatcctccagtt
gatcaatttgcaatcatttatgttatcaaagactttagaactgcagtaaaaaatttcttc
aaacgcggaaccaaatcgggcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATGTGCAGCTTGTGGAATCTCGA 637 513 412 Antisense
AACTGCGAGATGACTTTTCCCAATA 46 143 488 Antisense
ACAAGCTGAATGCTAGCCACCACAC 604 113 698 Antisense
TAGCCACCACACAGTTCAACTGCAG 443 651 711 Antisense
TTTGATCATTCAATCGCTCATTCCG 298 667 753 Antisense
GCTCATTCCGATAACTCTCATGTAC 180 301 768 Antisense
ACATACCAATTCTTATTCTCTTTGT 666 105 791 Antisense
ACTCCAATGATTCGCATTGCCGCCG 596 97 817 Antisense
GCCGGTCCTTATGTCAACATTGCGA 699 279 838 Antisense
GTAGCCATATATCCTCCAGTTGATC 406 457 871 Antisense
TCAAACGCGGAACCAAATCGGGCAC 78 607 950 Antisense
Sequence Source Affymetrix Proprietary Database