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[191534_at]

Description F29F11.2 /REP_DB=WormBase Gene ID /WP=CE05768 /TR=Q18354 /GB=CAA98274.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster 6grp_total > 73      4grp_total > 01      6grp_cgc > 76      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 4.4
(-2.3)
A 		3.8
(-2.6)
A 		3
(-3)
A 		15.9
(3)
A 		13
B 6.5
(-2.6)
A 		5.8
(-3)
A 		6
(-2.9)
A 		15.7
(3)
A 		10
C 8.7
(-3)
A 		8.5
(-3)
A 		14.4
(-2.1)
A 		48.8
(3)
A 		40
avr 6.5
(-2.9) 		6
(-3) 		7.8
(-2.5) 		26.8
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 16.4
(-2.9)
A 		15.3
(-3)
A 		89.5
(3)
A 		66.2
(1.1)
P 		43.7
(-0.7)
A 		43.6
(-0.7)
A 		74
B 13.9
(-3)
A 		19
(-2.6)
A 		100
(3)
P 		86.5
(2.1)
P 		47.2
(-0.7)
A 		47.7
(-0.6)
P 		86
C 17.2
(-3)
A 		49.9
(-0.7)
A 		47.2
(-0.9)
A 		101.9
(3)
P 		22.7
(-2.6)
A 		73.9
(1)
M 		85
avr 15.8
(-3) 		28.1
(-1.9) 		78.9
(2.5) 		84.9
(3) 		37.9
(-1.1) 		55.1
(0.4) 		69
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.6
(0.2)
A 		0.8
(-3)
A 		0.8
(-3)
A 		2.3
(3)
A 		2
B 2.1
(-0.8)
A 		1.4
(-3)
A 		1.4
(-3)
A 		3.3
(3)
A 		2
C 2.9
(-2.5)
A 		2.4
(-3)
A 		5
(-0.3)
A 		8.2
(3)
A 		6
avr 2.2
(-1.6) 		1.5
(-3) 		2.4
(-1.3) 		4.6
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 3
(-3)
A 		5.4
(-2.1)
A 		19.5
(3)
A 		16.8
(2)
P 		13.2
(0.7)
A 		10.6
(-0.2)
A 		17
B 4.8
(-3)
A 		6.3
(-2.5)
A 		24.3
(3)
P 		22.9
(2.6)
P 		19.2
(1.4)
A 		17.8
(1)
P 		20
C 6.4
(-3)
A 		15.2
(-0.1)
A 		12
(-1.2)
A 		20.5
(1.6)
P 		7.3
(-2.7)
A 		24.7
(3)
M 		18
avr 4.7
(-3) 		9
(-1.3) 		18.6
(2.4) 		20.1
(3) 		13.2
(0.3) 		17.7
(2.1) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191534_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13390
Sequence Type Exemplar sequence
Representative Public ID F29F11.2 NCBI
Target Description F29F11.2 /REP_DB=WormBase Gene ID /WP=CE05768 /TR=Q18354 /GB=CAA98274.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028523(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028523 NCBI Caenorhabditis elegans C32C4.7 (C32C4.7) mRNA, complete cds. 11/11 None
F29F11.2 ENSEMBL cdna:known chromosome:CEL140:V:10654579:10659525:-1 gene:F29F11.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003074 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10654578-10659525(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ugt-35
Ensembl F29F11.2
Entrez Gene 3565443 Entrez gene
SwissProt Q52GY8 EMBL-EBI
WormBase CE38491 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAI91175 Hypothetical protein C32C4.7 [Caenorhabditis elegans] ref|NP_001023694.1| C32C4.7 [Caenorhabditis elegans] 0.0
blast CAA98274 Hypothetical protein F29F11.2 [Caenorhabditis elegans] emb|CAA98112.2| Hypothetical protein F29F11.2 [Caenorhabditis elegans] ref|NP_505728.2| F29F11.2 [Caenorhabditis elegans] 0.0
blast CAE64804 Hypothetical protein CBG09597 [Caenorhabditis briggsae] 1.0E-170
blast CAA98274 Hypothetical protein F29F11.2 [Caenorhabditis elegans] emb|CAA98112.2| Hypothetical protein F29F11.2 [Caenorhabditis elegans] ref|NP_505728.2| F29F11.2 [Caenorhabditis elegans] 1.0E-168
blast CAA94904 Hypothetical protein C35A5.2 [Caenorhabditis elegans] ref|NP_505692.2| C35A5.2 [Caenorhabditis elegans] 1.0E-163
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 7.5E-33
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 9.8E-17
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.5E-20
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023694.1 1 494-516
F29F11.2 3 10-32,484-506,961-983
Sequence
Target Sequence 
>C. ELEGANS:191534_AT
caaatggattcctcagacggcacttttagccgattctcgtctttctgcatttatcactca
tgctggattgggaagtataaatgaattgagttacatgggtaaacctgcaattcttgttcc
aatttttgcggatcaactgagaaatgcaaaaatgttggttagacataatggatctatttc
actcgaaaaacaagatttgggaaattttgaaaaattgcgcgtgtcgttagccaaaatttt
aaaagacaacagttttcaagagaatgcagaaatcttggcaagacaactcaacaatcaacc
catttctccccgtgaacttctcataaaacatgcaacatttggtgcagagttcggagagct
cccttctttggatccgtattcacgacaaatgtcgtttttttctctcaatatgattgacat
tttcctgtttttaggtgtatttttggctattctagtttattttctgttcacttttttacg
actattacttaacttgcttcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAATGGATTCCTCAGACGGCACTT 524 193 2475 Antisense
GACGGCACTTTTAGCCGATTCTCGT 245 377 2490 Antisense
GGGTAAACCTGCAATTCTTGTTCCA 250 497 2571 Antisense
AAAATTGCGCGTGTCGTTAGCCAAA 653 131 2685 Antisense
GACAACTCAACAATCAACCCATTTC 432 365 2756 Antisense
TTCTCCCCGTGAACTTCTCATAAAA 445 693 2778 Antisense
TGCAGAGTTCGGAGAGCTCCCTTCT 299 575 2817 Antisense
CCCTTCTTTGGATCCGTATTCACGA 350 255 2835 Antisense
AATGTCGTTTTTTTCTCTCAATATG 542 163 2862 Antisense
TTCTGTTCACTTTTTTACGACTATT 683 691 2936 Antisense
ACGACTATTACTTAACTTGCTTCTA 371 91 2952 Antisense
Sequence Source Affymetrix Proprietary Database