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[191533_s_at] Thrombospondin type 1 domain

Description F53B7.5 /REP_DB=WormBase Gene ID /WP=CE05924 /TR=Q19522 /GB=CAA96634.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Thrombospondin type 1 domain
Cluster 6grp_high1_10_10 > 26      4grp_highest_8_8 > 51      4grp_high_8_8 > 25      6grp_total > 35      4grp_total > 39      6grp_high1_sub > De      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 242
1 2 3 4 range
A 493.6
(3)
P 		279.8
(-3)
P 		282.4
(-2.9)
P 		301.1
(-2.4)
P 		214
B 426
(3)
P 		311.3
(-1)
P 		251.8
(-3)
P 		324
(-0.5)
P 		174
C 481.5
(3)
P 		276.8
(-3)
P 		281
(-2.9)
P 		308.6
(-2.1)
P 		205
avr 467
(3) 		289.3
(-2.5) 		271.7
(-3) 		311.2
(-1.8) 		195

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 229
1 2 3 4 5 6 range
A 279.8
(1.1)
P 		330.8
(3)
P 		224.9
(-1)
P 		221
(-1.2)
P 		172.3
(-3)
A 		209.7
(-1.6)
P 		159
B 401.1
(3)
P 		335.3
(1.1)
P 		333.4
(1.1)
P 		198.6
(-2.7)
P 		189
(-3)
P 		255.7
(-1.1)
P 		212
C 372.7
(3)
P 		369.1
(2.9)
P 		276.1
(-0.3)
P 		198.3
(-3)
P 		206.4
(-2.7)
M 		252.1
(-1.1)
P 		174
avr 351.2
(3) 		345.1
(2.8) 		278.1
(0.3) 		206
(-2.4) 		189.2
(-3) 		239.2
(-1.1) 		162
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 179.7
(3)
P 		60.7
(-2.3)
P 		73.8
(-1.7)
P 		44.1
(-3)
P 		136
B 135.8
(3)
P 		76.9
(-1.6)
P 		58.4
(-3)
P 		69.1
(-2.2)
P 		77
C 159.4
(3)
P 		79.6
(-1.5)
P 		97.9
(-0.4)
P 		52
(-3)
P 		107
avr 158.3
(3) 		72.4
(-2) 		76.7
(-1.7) 		55.1
(-3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 51.6
(-2.8)
P 		117.6
(3)
P 		49
(-3)
P 		56.1
(-2.4)
P 		52
(-2.7)
A 		51.1
(-2.8)
P 		69
B 139.6
(3)
P 		111.6
(1.1)
P 		81
(-1)
P 		52.6
(-3)
P 		76.8
(-1.3)
P 		95.3
(-0.1)
P 		87
C 138.1
(3)
P 		112.6
(1.4)
P 		70.3
(-1.1)
P 		39.9
(-3)
P 		66.8
(-1.4)
M 		84.4
(-0.3)
P 		98
avr 109.8
(2.6) 		113.9
(3) 		66.8
(-1.4) 		49.5
(-3) 		65.2
(-1.5) 		76.9
(-0.4) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191533_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13303
Sequence Type Exemplar sequence
Representative Public ID F53B7.5 NCBI
Target Description F53B7.5 /REP_DB=WormBase Gene ID /WP=CE05924 /TR=Q19522 /GB=CAA96634.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Thrombospondin type 1 domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073400(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073400 NCBI Caenorhabditis elegans F53B7.5 (F53B7.5) mRNA, complete cds. 11/11 A 
SNAP00000012642 ENSEMBL cdna:SNAP chromosome:CEL140:V:10973841:10982814:-1 10/11 None
F53B7.5 ENSEMBL cdna:known chromosome:CEL140:V:10972987:10982625:-1 gene:F53B7.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033903 1/11 Cross Hyb Matching Probes None
GENEFINDER00000033915 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10973092-10982625(-) 100.0 100.0
Public Domain and Genome References
Gene Title Thrombospondin type 1 domain
Ensembl F53B7.5
Entrez Gene 179523 Entrez gene
SwissProt Q19522 EMBL-EBI
WormBase CE05924 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4190 aspartic-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA96654 Hypothetical protein F53B7.5 [Caenorhabditis elegans] emb|CAA96634.1| Hypothetical protein F53B7.5 [Caenorhabditis elegans] ref|NP_505801.1| F53B7.5 [Caenorhabditis elegans] 0.0
blast CAE75138 Hypothetical protein CBG23067 [Caenorhabditis briggsae] 0.0
blast ZP_00421276 Haemagluttinin motif:Hep_Hag [Burkholderia vietnamiensis G4] gb|EAM32254.1| Haemagluttinin motif:Hep_Hag [Burkholderia vietnamiensis G4] 2.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 1.7E-6
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 2.5E-28
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 4.1E-27
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 4.6E-38
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 1.6E-32
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 2.1E-39
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 5.6E-32
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 9.0E-38
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 7.6E-34
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 2.0E-38
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 1.4E-34
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 3.5E-35
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 7.6E-33
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 1.1E-36
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 7.9E-27
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 1.7E-30
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 5.1E-23
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 9.3E-36
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 8.2E-31
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 2.5E-28
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 4.1E-27
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 4.6E-38
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 1.6E-32
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 2.1E-39
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 5.6E-32
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 9.0E-38
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 7.6E-34
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 2.0E-38
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 1.4E-34
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 3.5E-35
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 7.6E-33
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 1.1E-36
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 7.9E-27
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 1.7E-30
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 5.1E-23
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 9.3E-36
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 8.2E-31
Sequence
Target Sequence 
>C. ELEGANS:191533_S_AT
gttctagtggaccatcagcaagctgtaacaccggattcgtgacggcagtgtccacacctg
gatatacaagtggatttatgactgttgacacaacaacttctggatcaataatgtctgcgg
atatcacatgtgcttcacctgtcacatcgcaaaccgcagctcttctgggttcaaacaata
atcaagtatcttctggagttggttctacattcatgactctaacgtgtaattccaactcac
aatgggtcactccagatggaacagtgataacctcattaagttgtggaactgttgcaccag
caacaacagcagcaactaccacaacactagctcccgcagcaacaacaacatcgacggcag
cagcatcggatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCTAGTGGACCATCAGCAAGCTG 285 443 7682 Antisense
CAGCAAGCTGTAACACCGGATTCGT 73 203 7697 Antisense
ACACCGGATTCGTGACGGCAGTGTC 280 89 7709 Antisense
GGCAGTGTCCACACCTGGATATACA 626 535 7725 Antisense
ATATCACATGTGCTTCACCTGTCAC 269 19 7802 Antisense
GCAGCTCTTCTGGGTTCAAACAATA 678 313 7837 Antisense
GTTGGTTCTACATTCATGACTCTAA 114 437 7879 Antisense
GACTCTAACGTGTAATTCCAACTCA 481 371 7896 Antisense
TCCAACTCACAATGGGTCACTCCAG 125 587 7912 Antisense
GTTGTGGAACTGTTGCACCAGCAAC 187 437 7961 Antisense
ACATCGACGGCAGCAGCATCGGATT 96 107 8029 Antisense
Sequence Source Affymetrix Proprietary Database