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[191532_at]

Description C26C6.8 /REP_DB=WormBase Gene ID /WP=CE05317 /TR=Q18204 /GB=CAA96594.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=tyrosine-protein kinase like
Cluster 6grp_total > 36      4grp_total > 26      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 12.1
(-3)
A 		66.5
(1.8)
A 		39.8
(-0.5)
A 		79.9
(3)
P 		68
B 25.1
(-3)
A 		57.3
(2.4)
A 		61.1
(3)
M 		44.2
(0.2)
A 		36
C 22.7
(-3)
A 		68.3
(-0.3)
A 		26.8
(-2.8)
A 		125.3
(3)
P 		103
avr 20
(-3) 		64
(1.2) 		42.6
(-0.9) 		83.1
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 60.7
(3)
A 		17.9
(-2.1)
A 		47
(1.4)
A 		10
(-3)
A 		33.1
(-0.3)
A 		31.1
(-0.5)
A 		51
B 17.1
(-1.6)
A 		46.1
(3)
A 		10.3
(-2.7)
A 		31
(0.6)
A 		8.3
(-3)
A 		30.6
(0.5)
A 		38
C 25.2
(-0.6)
A 		47.5
(3)
A 		9.9
(-3)
A 		44.5
(2.5)
A 		19.2
(-1.5)
A 		27.4
(-0.2)
A 		38
avr 34.3
(2) 		37.2
(3) 		22.4
(-2.2) 		28.5
(-0.1) 		20.2
(-3) 		29.7
(0.4) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 4.4
(-3)
A 		14.4
(3)
A 		10.4
(0.6)
A 		11.7
(1.4)
P 		10
B 8
(-3)
A 		14.1
(2.9)
A 		14.2
(3)
M 		9.4
(-1.6)
A 		6
C 7.5
(-3)
A 		19.6
(2.3)
A 		9.3
(-2.2)
A 		21.1
(3)
P 		14
avr 6.6
(-3) 		16
(3) 		11.3
(0) 		14.1
(1.8) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 11.2
(3)
A 		6.4
(-0.3)
A 		10.2
(2.3)
A 		2.5
(-3)
A 		10
(2.2)
A 		7.6
(0.5)
A 		9
B 6
(-1.4)
A 		15.4
(3)
A 		2.5
(-3)
A 		8.2
(-0.3)
A 		3.4
(-2.6)
A 		11.4
(1.1)
A 		13
C 9.4
(0.5)
A 		14.5
(3)
A 		2.5
(-3)
A 		8.9
(0.2)
A 		6.2
(-1.2)
A 		9.2
(0.4)
A 		12
avr 8.9
(0.3) 		12.1
(3) 		5.1
(-3) 		6.5
(-1.8) 		6.5
(-1.8) 		9.4
(0.7) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191532_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.710
Sequence Type Exemplar sequence
Representative Public ID C26C6.8 NCBI
Target Description C26C6.8 /REP_DB=WormBase Gene ID /WP=CE05317 /TR=Q18204 /GB=CAA96594.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=tyrosine-protein kinase like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059704
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000003866 ENSEMBL cdna:SNAP chromosome:CEL140:I:7511704:7513708:-1 10/11 None
GENEFINDER00000003881 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7511704:7513708:-1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_059704 6/11 Cross Hyb Matching Probes None
C26C6.8 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7511634-7513639(-) 88.64 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96594 Hypothetical protein C26C6.8 [Caenorhabditis elegans] 1.0E-153
blast CAA96594 Hypothetical protein C26C6.8 [Caenorhabditis elegans] 1.0E-151
blast NP_492105 C26C6.8 [Caenorhabditis elegans] 1.0E-119
blast NP_492105 C26C6.8 [Caenorhabditis elegans] 1.0E-114
blast CAE66554 Hypothetical protein CBG11866 [Caenorhabditis briggsae] 2.0E-88
blast CAE66554 Hypothetical protein CBG11866 [Caenorhabditis briggsae] 6.0E-85
Protein Domains
Database ID Description E-Value
Pfam IPR001452 EMBL-EBI SH3 1.1E-8
Pfam IPR001452 EMBL-EBI SH3 1.1E-8
Sequence
Target Sequence 
>C. ELEGANS:191532_AT
acacttgatcgccgttgggaaaaatcaaatttgcagagatttatcgacagtcttcctgtt
caaaaagaagaaggagaggtttttaaaatggatgagatatgcgaagttcaaatactacag
tcatttgatggatcagctccagatgatatatctgtgaaagatggagaatctgtcacagtt
ttgaatatatcagatcctgagtggacctatattcgaaattcggacaatcaatctggtttt
gtaccttcttcccatgttaagattccacatgaaatattgcaacaagctagccgtgtcatt
aaagaaaaatggtatcaattaaaagactcagaagacgcgaaaatttgttatttttgcgcc
aaaaatacagtacccggtctcgacacgataacaattttgttaagtgtgaaaacgtgtgcg
cctttaaagactactgtaatggaaaatgaaaatcttctcgtagtcgaacctttttctgga
agatcacctcttgatctaacagtccgaccaggtgaatggataaaatgcactggaagacca
gtagatgattggttgtgggccgtccgaatcgctgacgagaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACTTGATCGCCGTTGGGAAAAAT 319 107 334 Antisense
GATTTATCGACAGTCTTCCTGTTCA 297 429 371 Antisense
GATCCTGAGTGGACCTATATTCGAA 242 417 526 Antisense
TCAATCTGGTTTTGTACCTTCTTCC 493 633 561 Antisense
TTTGTACCTTCTTCCCATGTTAAGA 311 665 571 Antisense
ATTGCAACAAGCTAGCCGTGTCATT 710 5 609 Antisense
GTGTGAAAACGTGTGCGCCTTTAAA 452 483 737 Antisense
TCTCGTAGTCGAACCTTTTTCTGGA 281 611 789 Antisense
TCACCTCTTGATCTAACAGTCCGAC 219 621 817 Antisense
TAGATGATTGGTTGTGGGCCGTCCG 170 651 875 Antisense
GGCCGTCCGAATCGCTGACGAGAAG 529 543 891 Antisense
Sequence Source Affymetrix Proprietary Database