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[191531_at] 7TM chemoreceptor, str family

Description F59E11.13 /REP_DB=WormBase Gene ID /WP=CE11518 /GEN=str-84 /TR=O16755 /GB=AAG24147.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 40      4grp_total > 39      6grp_cgc > 83      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 57.9
(3)
A 		27
(-3)
A 		33.5
(-1.7)
A 		50.4
(1.5)
A 		31
B 39.2
(3)
A 		37.3
(2.7)
A 		4.2
(-3)
A 		15.4
(-1.1)
A 		35
C 97
(3)
A 		14.1
(-3)
A 		32.3
(-1.7)
A 		46.3
(-0.7)
A 		83
avr 64.7
(3) 		26.1
(-2.6) 		23.3
(-3) 		37.4
(-1) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 5.9
(-2.9)
A 		22.9
(-2)
A 		112.2
(3)
A 		58.1
(-0)
A 		4.4
(-3)
A 		20.6
(-2.1)
A 		108
B 66
(1.4)
A 		81.9
(3)
A 		22.9
(-3)
A 		50.1
(-0.2)
A 		35
(-1.8)
A 		30.3
(-2.2)
A 		59
C 42.7
(0.6)
A 		40.7
(0.4)
A 		14.2
(-3)
A 		61.5
(3)
A 		51.9
(1.8)
A 		35.2
(-0.3)
A 		47
avr 38.2
(-1) 		48.5
(1.3) 		49.8
(1.5) 		56.6
(3) 		30.4
(-2.6) 		28.7
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 21.1
(3)
A 		5.9
(-3)
A 		8.8
(-1.9)
A 		7.4
(-2.4)
A 		15
B 12.5
(3)
A 		9.2
(1.3)
A 		1
(-3)
A 		3.3
(-1.8)
A 		12
C 32.1
(3)
A 		4.1
(-3)
A 		11.2
(-1.5)
A 		7.8
(-2.2)
A 		28
avr 21.9
(3) 		6.4
(-2.9) 		7
(-2.7) 		6.2
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 1.1
(-3)
A 		8.2
(-1.2)
A 		24.4
(3)
A 		14.7
(0.5)
A 		1.3
(-2.9)
A 		5
(-2)
A 		23
B 23
(1.8)
A 		27.2
(3)
A 		5.6
(-3)
A 		13.3
(-0.9)
A 		14.2
(-0.6)
A 		11.3
(-1.4)
A 		22
C 15.8
(2.5)
A 		12.4
(1)
A 		3.6
(-3)
A 		12.4
(1)
A 		16.8
(3)
A 		11.8
(0.7)
A 		13
avr 13.3
(0.6) 		15.9
(3) 		11.2
(-1.3) 		13.5
(0.8) 		10.8
(-1.7) 		9.4
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191531_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12135
Sequence Type Exemplar sequence
Representative Public ID F59E11.13 NCBI
Target Description F59E11.13 /REP_DB=WormBase Gene ID /WP=CE11518 /GEN=str-84 /TR=O16755 /GB=AAG24147.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072918(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072918 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-84) (str-84) mRNA, complete cds. 11/11 None
SNAP00000037878 ENSEMBL cdna:SNAP chromosome:CEL140:V:8982108:8983515:-1 11/11 None
GENEFINDER00000037887 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8982108:8983515:-1 11/11 None
F59E11.13 ENSEMBL cdna:known chromosome:CEL140:V:8982108:8983515:-1 gene:F59E11.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8982108-8983516(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-84
Ensembl F59E11.13
Entrez Gene 191991 Entrez gene
SwissProt O16755 EMBL-EBI
WormBase CE11518 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24147 Seven tm receptor protein 84 [Caenorhabditis elegans] ref|NP_505319.1| Seven TM Receptor family member (str-84) [Caenorhabditis elegans] 0.0
blast CAE72059 Hypothetical protein CBG19145 [Caenorhabditis briggsae] 1.0E-158
blast AAG24151 Seven tm receptor protein 86 [Caenorhabditis elegans] ref|NP_505320.1| Seven TM Receptor family member (str-86) [Caenorhabditis elegans] 4.0E-72
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.6E-18
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505319.1 7 15-34,46-68,91-113,133-155,201-223,248-270,285-307
F59E11.13 7 15-34,46-68,91-113,133-155,201-223,248-270,285-307
SNAP00000037878 7 15-34,46-68,91-113,133-155,201-223,248-270,285-307
GENEFINDER00000037887 7 15-34,46-68,91-113,133-155,201-223,248-270,285-307
Sequence
Target Sequence 
>C. ELEGANS:191531_AT
tgttttgggttctcggatcgttcactctcggactttttctcatttcactgaaatatttct
ttcttggtgaatttgattatttcactgatcagctaacagaggaatttaaaacgaattata
atctgacaatggatcaagtactttacaacgggccaatatattacatttgcgatgacaacg
gagagtgcacaaagccaattggtgtctggttaacaatgatggctttatgttcatgctttt
tcatttgtcttggaatcatgggatacttcggaatgcaatgttacttcaaattggcaaaat
tacagtcggaattgagcgagcatacaagaagaatgcagaagcaattactatttgcattgg
ctattcaagcaggaattccaatcataatgatgtacaccccaactgctcttctcttggttt
ctccaattgttggagtttcatttggagcatactctaacattgcaatagctttagttgcgg
tttatcctccacttgatcaactagcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTTTGGGTTCTCGGATCGTTCAC 609 501 410 Antisense
TCGGACTTTTTCTCATTTCACTGAA 472 605 437 Antisense
CAAGTACTTTACAACGGGCCAATAT 322 157 544 Antisense
GCACAAAGCCAATTGGTGTCTGGTT 513 317 596 Antisense
GATGGCTTTATGTTCATGCTTTTTC 338 407 627 Antisense
GTTCATGCTTTTTCATTTGTCTTGG 216 445 638 Antisense
GATACTTCGGAATGCAATGTTACTT 212 421 671 Antisense
CATAATGATGTACACCCCAACTGCT 564 213 792 Antisense
CTCTTCTCTTGGTTTCTCCAATTGT 143 231 815 Antisense
GCTTTAGTTGCGGTTTATCCTCCAC 685 297 877 Antisense
TATCCTCCACTTGATCAACTAGCAA 233 659 892 Antisense
Sequence Source Affymetrix Proprietary Database