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[191529_at] Putative membrane protein

Description B0564.4 /REP_DB=WormBase Gene ID /WP=CE05178 /TR=SW:Q17529 /GB=CAA97766.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Putative membrane protein
Cluster 6grp_total > 93      4grp_total > 01      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 9.1
(-3)
A 		24.7
(-2)
A 		35.8
(-1.3)
A 		105.2
(3)
A 		96
B 46.4
(1.9)
A 		9.6
(-2.4)
A 		4.5
(-3)
A 		55.7
(3)
A 		51
C 24.9
(-1.4)
A 		10.6
(-3)
A 		37.5
(-0.1)
A 		65.7
(3)
A 		55
avr 26.8
(-1.8) 		15
(-3) 		25.9
(-1.9) 		75.5
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 5.6
(-3)
A 		6.1
(-2.9)
A 		10
(-2.4)
A 		28.4
(0.3)
A 		46.9
(3)
A 		38.7
(1.8)
A 		41
B 15.8
(-1.5)
A 		54.7
(3)
A 		2.6
(-3)
A 		27.1
(-0.2)
A 		25.5
(-0.4)
A 		6.3
(-2.6)
A 		52
C 35.4
(-0.6)
A 		16.8
(-2.8)
A 		65
(3)
A 		15.1
(-3)
A 		40
(-0)
A 		36.1
(-0.5)
A 		50
avr 18.9
(-3) 		25.9
(-0.7) 		25.9
(-0.7) 		23.5
(-1.5) 		37.5
(3) 		27
(-0.4) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 3.3
(-3)
A 		5.4
(-2)
A 		9.4
(0)
A 		15.4
(3)
A 		12
B 14.8
(3)
A 		2.4
(-2.4)
A 		1
(-3)
A 		11.9
(1.7)
A 		14
C 8.3
(0.1)
A 		3.1
(-3)
A 		13.1
(3)
A 		11.1
(1.8)
A 		10
avr 8.8
(0.4) 		3.6
(-3) 		7.8
(-0.3) 		12.8
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 1
(-3)
A 		2.2
(-2.5)
A 		2.2
(-2.5)
A 		7.2
(-0.2)
A 		14.2
(3)
A 		9.4
(0.8)
A 		13
B 5.5
(-1.3)
A 		18.2
(3)
A 		0.6
(-3)
A 		7.2
(-0.8)
A 		10.3
(0.3)
A 		2.3
(-2.4)
A 		18
C 13.1
(1.5)
A 		5.1
(-2.1)
A 		16.5
(3)
A 		3
(-3)
A 		12.9
(1.4)
A 		12.1
(1)
A 		14
avr 6.5
(-2.4) 		8.5
(-0.6) 		6.4
(-2.5) 		5.8
(-3) 		12.5
(3) 		7.9
(-1.1) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191529_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9283
Sequence Type Exemplar sequence
Representative Public ID B0564.4 NCBI
Target Description B0564.4 /REP_DB=WormBase Gene ID /WP=CE05178 /TR=SW:Q17529 /GB=CAA97766.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Putative membrane protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070123(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070123 NCBI Caenorhabditis elegans B0564.4 (B0564.4) mRNA, complete cds. 11/11 None
B0564.4 ENSEMBL cdna:known chromosome:CEL140:IV:13111023:13113052:-1 gene:B0564.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043355 3/11 Cross Hyb Matching Probes None
GENEFINDER00000043370 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13111028-13113058(-) 100.0 100.0
Public Domain and Genome References
Gene Title Putative membrane protein
Ensembl B0564.4
Entrez Gene 182044 Entrez gene
SwissProt Q17529 EMBL-EBI
WormBase CE05178 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA97766 Hypothetical protein B0564.4 [Caenorhabditis elegans] ref|NP_502524.1| B0564.4 [Caenorhabditis elegans] sp|Q17529|YQE4_CAEEL Hypothetical protein B0564.4 in chromosome IV 0.0
blast CAA97765 Hypothetical protein B0564.3 [Caenorhabditis elegans] ref|NP_502523.1| B0564.3 [Caenorhabditis elegans] sp|Q17528|YQE3_CAEEL Hypothetical protein B0564.3 in chromosome IV 0.0
blast CAE58653 Hypothetical protein CBG01822 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000615 EMBL-EBI Bestrophin 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502524.1 4 31-53,73-90,241-263,275-292
B0564.4 4 31-53,73-90,241-263,275-292
Sequence
Target Sequence 
>C. ELEGANS:191529_AT
ctggtctccttgctatattctgaagaatcatctcaaatttcaaattatcattatcacggt
tcaacgtccgaagtccatctggaacaaaaatgtagctctgttcgaatgatacctcactca
caatcagaatatactttgaagcatatgagaaagcaaacccttagcagaagtgtcttacct
gatcttcgatactttctcaacattccgtacggttatggagatccgagtatcacgatccaa
tcgcttattcgccagttcctcggtacaattgaacaccttgcccggttcgatgagatccgt
ttcacgttctgcgattccgtgaagcattcgagtgtacgcgtcgtcggtcatgatgaacaa
gcttctcggctccaggagcatcgagccgacatatctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGGTCTCCTTGCTATATTCTGAAG 279 241 1045 Antisense
TCAACGTCCGAAGTCCATCTGGAAC 475 631 1105 Antisense
AGCTCTGTTCGAATGATACCTCACT 101 81 1138 Antisense
AGTGTCTTACCTGATCTTCGATACT 202 59 1213 Antisense
GATACTTTCTCAACATTCCGTACGG 81 423 1232 Antisense
ATCACGATCCAATCGCTTATTCGCC 672 27 1273 Antisense
TCGGTACAATTGAACACCTTGCCCG 704 605 1304 Antisense
CGATGAGATCCGTTTCACGTTCTGC 45 249 1332 Antisense
GTACGCGTCGTCGGTCATGATGAAC 509 457 1378 Antisense
ATGATGAACAAGCTTCTCGGCTCCA 290 47 1394 Antisense
AGGAGCATCGAGCCGACATATCTCT 79 57 1418 Antisense
Sequence Source Affymetrix Proprietary Database