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[191528_s_at] beta-transducin like protein

Description K08F9.2 /REP_DB=WormBase Gene ID /WP=CE11944 /TR=O17939 /GB=CAB03187.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=beta-transducin like protein
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 88      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 95      6grp_total > 97      4grp_total > 59      6grp_highest_sub > Da      6grp_cgc > 69      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 354
1 2 3 4 range
A 427.9
(2.2)
P 		408.6
(1.7)
P 		456.9
(3)
P 		234.6
(-3)
P 		222
B 398.5
(-2.7)
P 		559.6
(2.1)
P 		588.4
(3)
P 		387.5
(-3)
P 		201
C 472.4
(0.8)
P 		521.7
(3)
P 		493.4
(1.8)
P 		384.4
(-3)
P 		137
avr 432.9
(0.3) 		496.6
(2.4) 		512.9
(3) 		335.5
(-3) 		177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1112
1 2 3 4 5 6 range
A 471.1
(-2.8)
P 		440.7
(-3)
P 		500.8
(-2.7)
P 		632.2
(-2)
P 		877.5
(-0.6)
P 		1552.4
(3)
P 		1112
B 546
(-2.3)
P 		458.5
(-3)
P 		507.4
(-2.6)
P 		731.2
(-0.9)
P 		884.9
(0.3)
P 		1224.6
(3)
P 		766
C 567.1
(-2.1)
P 		452.9
(-3)
P 		529.3
(-2.4)
P 		596.5
(-1.9)
P 		1078.9
(1.8)
P 		1242.4
(3)
P 		790
avr 528.1
(-2.5) 		450.7
(-3) 		512.5
(-2.6) 		653.3
(-1.6) 		947.1
(0.3) 		1339.8
(3) 		889
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 155.8
(3)
P 		88.7
(-0.3)
P 		119.5
(1.2)
P 		34.3
(-3)
P 		122
B 127.1
(1.8)
P 		138.2
(3)
P 		136.4
(2.8)
P 		82.6
(-3)
P 		56
C 156.4
(2.1)
P 		150
(1.8)
P 		172
(3)
P 		64.8
(-3)
P 		107
avr 146.4
(3) 		125.6
(1.5) 		142.6
(2.7) 		60.6
(-3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 370
1 2 3 4 5 6 range
A 86.8
(-3)
P 		156.7
(-1.6)
P 		109.1
(-2.5)
P 		160.3
(-1.5)
P 		264.8
(0.7)
P 		378
(3)
P 		291
B 190
(-1.8)
P 		152.6
(-2.5)
P 		123.2
(-3)
P 		193.7
(-1.7)
P 		359.5
(1.3)
P 		456.7
(3)
P 		334
C 210.2
(-1.2)
P 		138.2
(-2.6)
P 		134.7
(-2.7)
P 		120
(-3)
P 		349.1
(1.6)
P 		415.9
(3)
P 		296
avr 162.3
(-2.2) 		149.2
(-2.5) 		122.3
(-3) 		158
(-2.3) 		324.5
(1.1) 		416.9
(3) 		295
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191528_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13059
Sequence Type Exemplar sequence
Representative Public ID K08F9.2 NCBI
Target Description K08F9.2 /REP_DB=WormBase Gene ID /WP=CE11944 /TR=O17939 /GB=CAB03187.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=beta-transducin like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074332(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074332 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-216) (tag-216) mRNA, complete cds. 11/11 A 
SNAP00000023075 ENSEMBL cdna:SNAP chromosome:CEL140:V:15136901:15139386:-1 11/11 None
GENEFINDER00000023078 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15136901:15139386:-1 11/11 None
K08F9.2.3 ENSEMBL cdna:known chromosome:CEL140:V:15136338:15139387:-1 gene:K08F9.2 11/11 A 
K08F9.2.2 ENSEMBL cdna:known chromosome:CEL140:V:15136779:15139389:-1 gene:K08F9.2 11/11 A 
K08F9.2.1 ENSEMBL cdna:known chromosome:CEL140:V:15136779:15139387:-1 gene:K08F9.2 11/11 A 
K08F9.2.4 ENSEMBL cdna:known chromosome:CEL140:V:15136832:15139386:-1 gene:K08F9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15136900-15139386(-) 100.0 100.0
Public Domain and Genome References
Gene Title beta-transducin like protein
Gene Symbol tag-216
Ensembl K08F9.2
Entrez Gene 180022 Entrez gene
SwissProt O17939 EMBL-EBI
WormBase CE11944 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03187 Hypothetical protein K08F9.2 [Caenorhabditis elegans] ref|NP_506733.1| Temporarily Assigned Gene name family member (tag-216) [Caenorhabditis elegans] 0.0
blast CAE74779 Hypothetical protein CBG22609 [Caenorhabditis briggsae] 0.0
blast AAA83588 Uncoordinated protein 78, isoform a [Caenorhabditis elegans] ref|NP_001024356.1| UNCoordinated family member (unc-78) [Caenorhabditis elegans] gb|AAK11613.1| UNC-78 [Caenorhabditis elegans] sp|Q11176|WDR1_CAEEL Actin interacting protein 1 (AIP1) (Uncoordinated protein 78) pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From Caenorhabditis Elegans pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1) 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 5.2E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.9E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.3E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.1E-11
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 9.4E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.018
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.2
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.2E-9
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0034
Sequence
Target Sequence 
>C. ELEGANS:191528_S_AT
gaaaagcttcaaattgccgtctcaaccatgtggactagaagtttctgatgacttggcaat
tgttgcatgttacaagcacgtcgtcgttctgtcacggggaacgccaacggaaaatccaat
tgaattccattcgacttgtgtggcgttttgtgcggagaaaagtctggtggccgttggtgg
aaaagatgcgaaggttcatgtgtacaaactgaatggagatggacggctcgaggagttgaa
gaagattgagcacagtgcggaaatcaccgctgtctcattttccgacgatggggaatatct
agcggtcactgatttggctcgaaaggtgattccctactctgtctccacggatttttccgt
cacctctccaaactcgtggactttccatacttcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAAGCTTCAAATTGCCGTCTCAA 5 355 1197 Antisense
TTGCCGTCTCAACCATGTGGACTAG 147 703 1210 Antisense
TGTTACAAGCACGTCGTCGTTCTGT 588 559 1264 Antisense
TCTGTCACGGGGAACGCCAACGGAA 47 601 1284 Antisense
ATTCGACTTGTGTGGCGTTTTGTGC 363 9 1325 Antisense
GAAAAGTCTGGTGGCCGTTGGTGGA 691 353 1353 Antisense
GTGCGGAAATCACCGCTGTCTCATT 588 477 1451 Antisense
CTGTCTCATTTTCCGACGATGGGGA 675 239 1466 Antisense
CTAGCGGTCACTGATTTGGCTCGAA 455 225 1495 Antisense
CGAAAGGTGATTCCCTACTCTGTCT 174 253 1516 Antisense
AACTCGTGGACTTTCCATACTTCGA 656 139 1567 Antisense
Sequence Source Affymetrix Proprietary Database