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[191527_s_at] Putative membrane protein

Description C07A9.8 /REP_DB=WormBase Gene ID /WP=CE00497 /TR=SW:P34319 /GB=CAA82342.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Putative membrane protein
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 85      4grp_high_8_8 > 04      6grp_highest_nonorm > 91      6grp_total > 76      4grp_total > 04      6grp_highest_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 455
1 2 3 4 range
A 135.1
(-0.6)
P 		77.8
(-2.2)
P 		51.9
(-3)
P 		256.5
(3)
P 		205
B 125.6
(-2.1)
P 		74.4
(-2.7)
P 		54.9
(-3)
A 		504.9
(3)
P 		450
C 160.6
(-0.7)
P 		49.9
(-3)
P 		61.8
(-2.8)
P 		341.4
(3)
P 		292
avr 140.4
(-1.4) 		67.4
(-2.8) 		56.2
(-3) 		367.6
(3) 		311

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 324
1 2 3 4 5 6 range
A 81.8
(-2.6)
P 		71
(-3)
P 		199.3
(1.6)
P 		194.8
(1.5)
P 		130.6
(-0.9)
P 		237.9
(3)
P 		167
B 98
(-2.3)
P 		75
(-3)
P 		188.3
(0.4)
P 		144.6
(-0.9)
P 		204.8
(0.8)
P 		277.6
(3)
P 		203
C 79.6
(-3)
P 		94.6
(-2.7)
P 		154.7
(-1.6)
P 		146.8
(-1.7)
P 		188.9
(-0.9)
P 		394.8
(3)
P 		315
avr 86.5
(-2.8) 		80.2
(-3) 		180.8
(-0.3) 		162.1
(-0.8) 		174.8
(-0.5) 		303.4
(3) 		223
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 49.2
(3)
P 		16.9
(-2.4)
P 		13.6
(-3)
P 		37.6
(1)
P 		36
B 40.1
(-1.3)
P 		18.4
(-2.6)
P 		12.7
(-3)
A 		107.6
(3)
P 		95
C 53.2
(2.4)
P 		14.4
(-3)
P 		21.5
(-2)
P 		57.6
(3)
P 		43
avr 47.5
(0.7) 		16.6
(-2.9) 		15.9
(-3) 		67.6
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 15.1
(-3)
P 		25.3
(-1.6)
P 		43.4
(1)
P 		49.4
(1.8)
P 		39.4
(0.4)
P 		57.9
(3)
P 		43
B 34.1
(-2.3)
P 		25
(-3)
P 		45.7
(-1.4)
P 		38.3
(-2)
P 		83.2
(1.4)
P 		103.5
(3)
P 		79
C 29.5
(-3)
P 		28.9
(-3)
P 		39.4
(-2.4)
P 		29.5
(-3)
P 		61.1
(-1.1)
P 		132.2
(3)
P 		103
avr 26.2
(-3) 		26.4
(-3) 		42.8
(-1.6) 		39.1
(-1.9) 		61.2
(-0.1) 		97.9
(3) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191527_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6559
Sequence Type Exemplar sequence
Representative Public ID C07A9.8 NCBI
Target Description C07A9.8 /REP_DB=WormBase Gene ID /WP=CE00497 /TR=SW:P34319 /GB=CAA82342.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Putative membrane protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066741(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066741 NCBI Caenorhabditis elegans C07A9.8 (C07A9.8) mRNA, complete cds. 11/11 None
GENEFINDER00000039337 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9685066:9690115:-1 11/11 None
SNAP00000039326 ENSEMBL cdna:SNAP chromosome:CEL140:III:9687308:9688910:-1 10/11 None
C07A9.8 ENSEMBL cdna:known chromosome:CEL140:III:9686886:9690149:-1 gene:C07A9.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9686921-9690111(-) 100.0 100.0
Public Domain and Genome References
Gene Title Putative membrane protein
Ensembl C07A9.8
Entrez Gene 176367 Entrez gene
SwissProt P34319 EMBL-EBI
WormBase CE33596 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA82342 Hypothetical protein C07A9.8 [Caenorhabditis elegans] ref|NP_499142.2| C07A9.8 [Caenorhabditis elegans] sp|P34319|YKT8_CAEEL Hypothetical protein C07A9.8 in chromosome III 0.0
blast CAE65153 Hypothetical protein CBG10021 [Caenorhabditis briggsae] 0.0
blast CAA82342 Hypothetical protein C07A9.8 [Caenorhabditis elegans] ref|NP_499142.2| C07A9.8 [Caenorhabditis elegans] sp|P34319|YKT8_CAEEL Hypothetical protein C07A9.8 in chromosome III 1.0E-165
blast CAE65153 Hypothetical protein CBG10021 [Caenorhabditis briggsae] 1.0E-161
blast CAE62025 Hypothetical protein CBG06036 [Caenorhabditis briggsae] 1.0E-125
Protein Domains
Database ID Description E-Value
Pfam IPR000615 EMBL-EBI Bestrophin 3.5E-12
Pfam IPR000615 EMBL-EBI Bestrophin 1.0E-126
Pfam IPR000615 EMBL-EBI Bestrophin 1.0E-126
Pfam IPR000615 EMBL-EBI Bestrophin 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499142.2 4 79-97,118-137,272-294,314-331
C07A9.8 4 79-97,118-137,272-294,314-331
GENEFINDER00000039337 3 92-111,246-268,288-305
SNAP00000039326 3 170-187,199-216,315-337
Sequence
Target Sequence 
>C. ELEGANS:191527_S_AT
gaagtgctctgacaactgtttctatgtatgattgggtaccaattccattaatgtacccac
aacttgttaatatggctgtacatacatactttttcctttgcatattcacaagacaattct
tcatttctgctgatgctcacaataagactgaagttgatctttatattccatttatgacaa
tcatcgaattcattttctatatgggatggttaaaagttgcaatggaattactcaatccat
ttggagaagatgctgatgattttgattgtaatttacttattgatcgaaatcttgcaattg
gattgacatctgtggatgatgcttacgatcaacttccagaagttaaacctgatgtattta
ctggaggatcagttaaaccattggattcagatgatactagaagtcttaaatatcactttg
gaagtgcagcgcaaatggaagagatatcatatttgaaaaaagaagaaaataaaatgattg
ctgctggcaagaagccgaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTGCTCTGACAACTGTTTCTAT 670 335 812 Antisense
TACCAATTCCATTAATGTACCCACA 35 651 848 Antisense
ACCCACAACTTGTTAATATGGCTGT 56 91 866 Antisense
GTACATACATACTTTTTCCTTTGCA 271 461 889 Antisense
TTTCCTTTGCATATTCACAAGACAA 614 669 903 Antisense
AAGACAATTCTTCATTTCTGCTGAT 457 153 921 Antisense
TTCTGCTGATGCTCACAATAAGACT 589 685 936 Antisense
TGATCTTTATATTCCATTTATGACA 375 565 966 Antisense
GACATCTGTGGATGATGCTTACGAT 571 369 1116 Antisense
GAGGATCAGTTAAACCATTGGATTC 671 401 1175 Antisense
GATTGCTGCTGGCAAGAAGCCGAAC 206 435 1287 Antisense
Sequence Source Affymetrix Proprietary Database