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[191526_at] sodium/phosphate transporter

Description C18D1.2 /REP_DB=WormBase Gene ID /WP=CE01502 /TR=Q09479 /GB=CAA88433.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=sodium-phosphate transporter
Cluster 6grp_total > 23      4grp_total > 46      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 89.5
(3)
P 		13.6
(-3)
A 		43.8
(-0.6)
A 		58
(0.5)
A 		76
B 101.9
(3)
P 		58.2
(0)
A 		26
(-2.2)
A 		13.7
(-3)
A 		88
C 110.6
(3)
P 		55.4
(-0.9)
A 		26.7
(-3)
A 		32.7
(-2.6)
A 		84
avr 100.7
(3) 		42.4
(-2.1) 		32.2
(-3) 		34.8
(-2.8) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 132
(3)
P 		91.5
(0.6)
P 		58.4
(-1.3)
A 		37
(-2.6)
A 		48.5
(-1.9)
P 		29.6
(-3)
A 		102
B 87.4
(3)
P 		50.6
(-0.5)
P 		84.7
(2.7)
P 		49.9
(-0.6)
P 		41.1
(-1.4)
P 		24.8
(-3)
A 		63
C 69
(1.5)
P 		51.4
(-0.5)
P 		66.3
(1.2)
P 		82.3
(3)
M 		32
(-2.7)
P 		29.3
(-3)
A 		53
avr 96.1
(3) 		64.5
(0.2) 		69.8
(0.7) 		56.4
(-0.5) 		40.5
(-1.9) 		27.9
(-3) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 32.6
(3)
P 		2.9
(-3)
A 		11.4
(-1.3)
A 		8.5
(-1.9)
A 		30
B 32.5
(3)
P 		14.4
(-0.7)
A 		6
(-2.4)
A 		2.9
(-3)
A 		30
C 36.6
(3)
P 		15.9
(-1)
A 		9.3
(-2.3)
A 		5.5
(-3)
A 		31
avr 33.9
(3) 		11.1
(-1.8) 		8.9
(-2.3) 		5.6
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 24.3
(1.1)
P 		32.5
(3)
P 		12.7
(-1.7)
A 		9.4
(-2.5)
A 		14.6
(-1.2)
P 		7.2
(-3)
A 		25
B 30.4
(3)
P 		16.8
(-0.9)
P 		20.6
(0.2)
P 		13.2
(-1.9)
P 		16.7
(-0.9)
P 		9.3
(-3)
A 		21
C 25.6
(3)
P 		15.7
(-0.8)
P 		16.9
(-0.3)
P 		16.5
(-0.5)
M 		10.3
(-2.8)
P 		9.8
(-3)
A 		16
avr 26.8
(3) 		21.7
(1.3) 		16.7
(-0.4) 		13
(-1.6) 		13.9
(-1.3) 		8.8
(-3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191526_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3138
Sequence Type Exemplar sequence
Representative Public ID C18D1.2 NCBI
Target Description C18D1.2 /REP_DB=WormBase Gene ID /WP=CE01502 /TR=Q09479 /GB=CAA88433.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=sodium-phosphate transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063773(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063773 NCBI Caenorhabditis elegans C18D1.2 (C18D1.2) mRNA, complete cds. 11/11 None
SNAP00000007491 ENSEMBL cdna:SNAP chromosome:CEL140:II:10057025:10059620:1 11/11 None
C18D1.2 ENSEMBL cdna:known chromosome:CEL140:II:10056899:10058904:1 gene:C18D1.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000007496 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10056895-10058901(+) 100.0 100.0
Public Domain and Genome References
Gene Title sodium/phosphate transporter
Ensembl C18D1.2
Entrez Gene 182781 Entrez gene
SwissProt Q09479 EMBL-EBI
WormBase CE35829 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88433 Hypothetical protein C18D1.2 [Caenorhabditis elegans] ref|NP_496174.2| C18D1.2 [Caenorhabditis elegans] 0.0
blast CAE59350 Hypothetical protein CBG02699 [Caenorhabditis briggsae] 0.0
blast CAE59350 Hypothetical protein CBG02699 [Caenorhabditis briggsae] 1.0E-177
blast CAB07353 Hypothetical protein F11A5.9 [Caenorhabditis elegans] ref|NP_507089.1| F11A5.9 [Caenorhabditis elegans] 1.0E-165
blast CAE61120 Hypothetical protein CBG04877 [Caenorhabditis briggsae] 1.0E-151
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496174.2 10 19-41,81-103,110-132,137-159,168-190,200-222,333-355,359-381,394-416,426-448
C18D1.2 10 19-41,81-103,110-132,137-159,168-190,200-222,333-355,359-381,394-416,426-448
SNAP00000007491 8 39-61,71-93,100-122,142-164,276-298,302-324,337-359,369-391
Sequence
Target Sequence 
>C. ELEGANS:191526_AT
gttcacgccaacatatcttcataaaatcctaggattctctgttcaagacacgggaccatt
cagtgcattgccacaagtaatcaccgcatttgtcaaggtatctgctggatactcagccga
caaattgcaatgttgcaccccgaaaacttcagtaagaatattcaatagtttggcattagg
tggaatgagcttcatgtttgtgggactagcaataattccaactagcatgccttatttggg
actgtttatgcttattttgtcatgttcaattattggattcaattgtggaggatttttcag
atgctcggcaatttatgctgcacagcacaatcatttcgtcatgggaatgaactcatttct
caattgtcttgctgctcttctagctcccgttattgtcaatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCACGCCAACATATCTTCATAAA 94 445 903 Antisense
GATTCTCTGTTCAAGACACGGGACC 643 429 935 Antisense
ACACGGGACCATTCAGTGCATTGCC 270 111 950 Antisense
GTGCATTGCCACAAGTAATCACCGC 550 479 965 Antisense
GGTATCTGCTGGATACTCAGCCGAC 454 505 999 Antisense
CAATGTTGCACCCCGAAAACTTCAG 205 183 1030 Antisense
ACTAGCATGCCTTATTTGGGACTGT 575 101 1123 Antisense
GATGCTCGGCAATTTATGCTGCACA 88 415 1202 Antisense
GCTGCACAGCACAATCATTTCGTCA 436 297 1219 Antisense
ATTTCTCAATTGTCTTGCTGCTCTT 301 17 1257 Antisense
TTCTAGCTCCCGTTATTGTCAATAT 429 691 1280 Antisense
Sequence Source Affymetrix Proprietary Database