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[191523_at] 7TM chemoreceptor, srh family

Description W10G11.10 /REP_DB=WormBase Gene ID /WP=CE26685 /GEN=srh-59 /TR=O44909 /GB=AAG24227.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 94      4grp_total > 52      6grp_cgc > 64      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 36
(1.7)
A 		27.6
(-0.3)
A 		16.3
(-3)
A 		41.5
(3)
A 		25
B 15.9
(-1.6)
A 		44
(1.6)
A 		56.4
(3)
A 		3.3
(-3)
A 		53
C 37.5
(3)
A 		20.3
(-0.3)
A 		6.4
(-2.9)
A 		6
(-3)
A 		32
avr 29.8
(2.6) 		30.6
(3) 		26.4
(1.2) 		16.9
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 19.1
(-1.1)
A 		30
(1)
A 		40.4
(3)
A 		9.2
(-3)
A 		38.7
(2.7)
A 		16.6
(-1.6)
A 		31
B 21.5
(-1)
A 		21.7
(-1)
A 		4.8
(-2.9)
A 		57.8
(3)
A 		3.8
(-3)
A 		41.6
(1.2)
A 		54
C 16.1
(-2.3)
A 		61
(1.7)
A 		8.7
(-3)
A 		25.1
(-1.5)
A 		74.8
(3)
A 		40.4
(-0.1)
A 		66
avr 18.9
(-2.7) 		37.6
(2.6) 		18
(-3) 		30.7
(0.6) 		39.1
(3) 		32.9
(1.2) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 13.1
(3)
A 		6
(-1.8)
A 		4.3
(-3)
A 		6.1
(-1.8)
A 		9
B 5.1
(-0.9)
A 		10.9
(1.9)
A 		13.1
(3)
A 		0.7
(-3)
A 		12
C 12.4
(3)
A 		5.8
(-0.5)
A 		2.2
(-2.4)
A 		1
(-3)
A 		11
avr 10.2
(3) 		7.6
(0.9) 		6.5
(0.1) 		2.6
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 3.5
(-2.2)
A 		10.7
(2.4)
A 		8.8
(1.1)
A 		2.3
(-3)
A 		11.7
(3)
A 		4
(-1.9)
A 		9
B 7.5
(-0.4)
A 		7.2
(-0.5)
A 		1.2
(-3)
A 		15.3
(2.9)
A 		1.5
(-2.9)
A 		15.5
(3)
A 		14
C 6
(-2)
A 		18.6
(1.5)
A 		2.2
(-3)
A 		5
(-2.2)
A 		24.2
(3)
A 		13.5
(0.1)
A 		22
avr 5.7
(-1.9) 		12.2
(2.8) 		4.1
(-3) 		7.5
(-0.6) 		12.5
(3) 		11
(1.9) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191523_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5586
Sequence Type Exemplar sequence
Representative Public ID W10G11.10 NCBI
Target Description W10G11.10 /REP_DB=WormBase Gene ID /WP=CE26685 /GEN=srh-59 /TR=O44909 /GB=AAG24227.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062187
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062187 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-59) (srh-59) mRNA, complete cds. None
W10G11.10 ENSEMBL cdna:known chromosome:CEL140:II:3582046:3583451:1 gene:W10G11.10 None
GENEFINDER00000013282 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3582835:3586028:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3582044-3584084(+) 98.18 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-59
Ensembl W10G11.10
Entrez Gene 191865 Entrez gene
SwissProt O44909 EMBL-EBI
WormBase CE26685 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG24227 Serpentine receptor, class h protein 59 [Caenorhabditis elegans] ref|NP_494588.1| Serpentine Receptor, class H family member (srh-59) [Caenorhabditis elegans] 0.0
blast E88102 protein W10G11.10 [imported] - Caenorhabditis elegans 1.0E-176
blast AAG24217 Serpentine receptor, class h protein 60 [Caenorhabditis elegans] ref|NP_494589.1| Serpentine Receptor, class H family member (srh-60) [Caenorhabditis elegans] 1.0E-156
blast AAG24217 Serpentine receptor, class h protein 60 [Caenorhabditis elegans] ref|NP_494589.1| Serpentine Receptor, class H family member (srh-60) [Caenorhabditis elegans] 1.0E-110
blast AAG24227 Serpentine receptor, class h protein 59 [Caenorhabditis elegans] ref|NP_494588.1| Serpentine Receptor, class H family member (srh-59) [Caenorhabditis elegans] 6.0E-90
blast E88102 protein W10G11.10 [imported] - Caenorhabditis elegans 2.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.2E-45
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 3.2E-38
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 7.5E-63
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494588.1 7 25-47,75-97,107-125,146-165,202-224,252-274,289-307
W10G11.10 7 25-47,75-97,107-125,146-165,202-224,252-274,289-307
GENEFINDER00000013282 6 21-43,73-92,125-147,203-225,253-275,290-308
Sequence
Target Sequence 
>C. ELEGANS:191523_AT
gttaaagcaaataccgtgccccacgatcgagttttttgactccaaaacatatgtcctatt
ggaaccagacgaaatcctcccgttattttctaatattatcggatttgggggtattcttgc
tgaggtgcttttcttcctatttcacactgtataccatctgacgatggtagggaacacatc
aatttcagagtcaacaagaaaaatgcagaggaagtttttgaaatatgtctcgttacagat
ctcaattcccttgatagcaattgtgttcccagtcttattctctttgtatgcgggcacgat
gagctattataatcaagcagctaacaacaacgcgatgataattatggctaatcacggatt
gctgagcacctgctgcacactttccatctatcaaccgtatagaggttttattttgggcaa
attaacaggaaatccggtggaagtatccccagtgaacataataccagctctcaacaaccg
tgctatgataattatggcgaatcatagattattaagcacctgctgcattctttttattta
taaaccctatcggaattttattatcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTAAAGCAAATACCGTGCCCCACG 52 367 543 Antisense
TGCTGAGGTGCTTTTCTTCCTATTT 94 583 660 Antisense
GGAACACATCAATTTCAGAGTCAAC 318 529 713 Antisense
AATATGTCTCGTTACAGATCTCAAT 15 173 764 Antisense
GAAATCCGGTGGAAGTATCCCCAGT 91 361 971 Antisense
GGAAGTATCCCCAGTGAACATAATA 199 525 981 Antisense
GAACATAATACCAGCTCTCAACAAC 507 351 996 Antisense
CAGCTCTCAACAACCGTGCTATGAT 573 203 1007 Antisense
TCATAGATTATTAAGCACCTGCTGC 685 619 1044 Antisense
CACCTGCTGCATTCTTTTTATTTAT 688 201 1059 Antisense
AACCCTATCGGAATTTTATTATCAG 51 147 1085 Antisense
Sequence Source Affymetrix Proprietary Database