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[191522_s_at]

Description C32E12.3 /REP_DB=WormBase Gene ID /WP=CE04135 /TR=P91120 /GB=AAB53877.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=HMG-box containing protein
Cluster 6grp_total > 10      4grp_total > 49      6grp_cgc > 74      6grp_cgc_sub > 02_03_04_05      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 457
1 2 3 4 range
A 3.8
(-3)
A 		350.4
(2.8)
A 		363
(3)
A 		11.1
(-2.9)
A 		359
B 9
(-3)
A 		420.1
(3)
A 		397.7
(2.7)
A 		11.6
(-3)
A 		411
C 4.8
(-3)
A 		359.8
(1.7)
A 		461
(3)
P 		7.3
(-3)
A 		456
avr 5.9
(-3) 		376.8
(2.5) 		407.2
(3) 		10
(-2.9) 		401

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 354
1 2 3 4 5 6 range
A 39.4
(-3)
A 		360.8
(3)
A 		169.9
(-0.6)
A 		238.7
(0.7)
A 		222.3
(0.4)
A 		87.4
(-2.1)
A 		321
B 6.6
(-3)
A 		311.9
(3)
A 		158.9
(-0)
A 		208.8
(1)
A 		176
(0.3)
A 		7.7
(-3)
A 		305
C 41.3
(-3)
A 		304.6
(3)
A 		268
(2.2)
A 		301.4
(2.9)
A 		257.8
(1.9)
A 		121.3
(-1.2)
A 		263
avr 29.1
(-3) 		325.8
(3) 		198.9
(0.4) 		249.6
(1.5) 		218.7
(0.8) 		72.1
(-2.1) 		297
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 160
1 2 3 4 range
A 1.4
(-3)
A 		76.1
(1.8)
A 		94.9
(3)
A 		1.6
(-3)
A 		94
B 2.9
(-3)
A 		103.7
(3)
A 		92.2
(2.3)
A 		2.5
(-3)
A 		101
C 1.6
(-3)
A 		103.4
(0.8)
A 		160.7
(3)
P 		1.2
(-3)
A 		160
avr 2
(-3) 		94.4
(1.9) 		115.9
(3) 		1.8
(-3) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 7.3
(-3)
A 		128.3
(3)
A 		37
(-1.5)
A 		60.5
(-0.4)
A 		67.1
(-0)
A 		21.3
(-2.3)
A 		121
B 2.3
(-3)
A 		103.8
(3)
A 		38.6
(-0.9)
A 		55.3
(0.1)
A 		71.5
(1.1)
A 		2.9
(-3)
A 		102
C 15.3
(-3)
A 		93
(3)
A 		68.2
(1.1)
A 		60.6
(0.5)
A 		83.4
(2.3)
A 		40.6
(-1)
A 		78
avr 8.3
(-3) 		108.4
(3) 		47.9
(-0.6) 		58.8
(0) 		74
(0.9) 		21.6
(-2.2) 		100
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191522_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2515
Sequence Type Exemplar sequence
Representative Public ID C32E12.3 NCBI
Target Description C32E12.3 /REP_DB=WormBase Gene ID /WP=CE04135 /TR=P91120 /GB=AAB53877.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=HMG-box containing protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059144(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059144 NCBI Caenorhabditis elegans Osmotic Stress Resistant family member (osr-1) (osr-1) mRNA, complete cds. 11/11 None
SNAP00000039921 ENSEMBL cdna:SNAP chromosome:CEL140:I:5200355:5203409:-1 11/11 None
GENEFINDER00000039928 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5200355:5203409:-1 11/11 None
C32E12.3 ENSEMBL cdna:known chromosome:CEL140:I:5200272:5203507:-1 gene:C32E12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5200354-5208124(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol osr-1
Ensembl C32E12.3
Entrez Gene 172161 Entrez gene
SwissProt P91120 EMBL-EBI
WormBase CE30495 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM15555 Osmotic stress resistant protein 1 [Caenorhabditis elegans] gb|AAR12229.1| osmotic stress resistance protein [Caenorhabditis elegans] ref|NP_491545.2| Osmotic Stress Resistant family member (osr-1) [Caenorhabditis elegans] 0.0
blast T25591 hypothetical protein C32E12.3 - Caenorhabditis elegans 0.0
blast CAE67367 Hypothetical protein CBG12837 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:191522_S_AT
aagaccacgtaaaatgcttccattattaattggatctgatccaaaagttcaagaggaaat
acgaagacatccaagtaccgaatggaaaattgcaaaagaatcaagagttttgacaaattt
gaagaataatccaagtcttgctgcattgttcatggatgataaattagagaatacattgaa
aggaaggcaaatgttaactgatgaacagaaaggtagaacacgtgtcaaaacaattcgtgc
attaccaagactgttcggtgcaccaactgcaaaagctgaaatgattgatgcaaaggtatt
ccaagatattgaagaacgtcccattcctccattgttctttgaaccaaaaggaaggcatac
gagattgagatggactggagcaaatgaaaaagaaattccaggacttggaagtcgcttcat
tctcccatctcttgatccaactatgccagccttgaacacggctttctcgactcaggggcg
agcccgtgacgagtgggataccatgttcaaaatcccgaata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGACCACGTAAAATGCTTCCATTA 83 155 2604 Antisense
ATCCAAGTCTTGCTGCATTGTTCAT 203 41 2732 Antisense
AATTCGTGCATTACCAAGACTGTTC 416 177 2835 Antisense
CAAGACTGTTCGGTGCACCAACTGC 361 185 2849 Antisense
ATATTGAAGAACGTCCCATTCCTCC 274 19 2909 Antisense
CATTCCTCCATTGTTCTTTGAACCA 392 217 2925 Antisense
GGACTTGGAAGTCGCTTCATTCTCC 678 523 3004 Antisense
TTGATCCAACTATGCCAGCCTTGAA 284 705 3035 Antisense
CAGCCTTGAACACGGCTTTCTCGAC 288 203 3050 Antisense
ACTCAGGGGCGAGCCCGTGACGAGT 677 57 3073 Antisense
GATACCATGTTCAAAATCCCGAATA 496 423 3100 Antisense
Sequence Source Affymetrix Proprietary Database