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[191521_s_at] protein-tyrosine phosphatase

Description F26A3.4 /REP_DB=WormBase Gene ID /WP=CE09669 /TR=Q93592 /GB=CAB01700.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 88      4grp_highest_8_8 > 15      4grp_high_8_8 > 13      6grp_highest_nonorm > 59      6grp_total > 88      4grp_total > 10      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9761
1 2 3 4 range
A 2516
(-2.7)
P 		2824.2
(-2.5)
P 		2195.8
(-3)
P 		9664.7
(3)
P 		7469
B 2156.1
(-2.9)
P 		3134.7
(-2.3)
P 		1962.7
(-3)
P 		11723.4
(3)
P 		9761
C 2552.8
(-2.8)
P 		3234
(-2.4)
P 		2248.5
(-3)
P 		11412.9
(3)
P 		9164
avr 2408.3
(-2.8) 		3064.3
(-2.4) 		2135.7
(-3) 		10933.7
(3) 		8798

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4073
1 2 3 4 5 6 range
A 1868.9
(-2.4)
P 		2338.2
(-1.7)
P 		1460.3
(-3)
P 		1857.1
(-2.4)
P 		3352
(-0.2)
P 		5533.3
(3)
P 		4073
B 2041.7
(-2)
P 		2169
(-1.7)
P 		1489.2
(-3)
P 		2078.9
(-1.9)
P 		3244.9
(0.3)
P 		4662
(3)
P 		3173
C 2410.7
(-1.9)
P 		1842
(-2.9)
P 		1765
(-3)
P 		2367.1
(-2)
P 		4238.1
(1.3)
P 		5240.9
(3)
P 		3476
avr 2107.1
(-2.1) 		2116.4
(-2.1) 		1571.5
(-3) 		2101
(-2.1) 		3611.7
(0.4) 		5145.4
(3) 		3574
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2044
1 2 3 4 range
A 916.1
(-0.6)
P 		613.1
(-2.7)
P 		574
(-3)
P 		1414.7
(3)
P 		841
B 687.6
(-2.3)
P 		774.2
(-2.1)
P 		454.8
(-3)
P 		2498.3
(3)
P 		2044
C 845
(-2.7)
P 		929.8
(-2.2)
P 		783.7
(-3)
P 		1924.4
(3)
P 		1141
avr 816.2
(-2.1) 		772.4
(-2.2) 		604.2
(-3) 		1945.8
(3) 		1342

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1436
1 2 3 4 5 6 range
A 344.5
(-2.8)
P 		831.6
(-0)
P 		318
(-3)
P 		471
(-2.1)
P 		1011.5
(1)
P 		1347.2
(3)
P 		1029
B 710.4
(-1.5)
P 		722
(-1.4)
P 		361.6
(-3)
P 		550.6
(-2.2)
P 		1318.3
(1.2)
P 		1738.4
(3)
P 		1377
C 893.6
(-1)
P 		562
(-2.5)
P 		449.2
(-3)
P 		476
(-2.9)
P 		1371.4
(1.2)
P 		1754.4
(3)
P 		1305
avr 649.5
(-1.7) 		705.2
(-1.4) 		376.3
(-3) 		499.2
(-2.4) 		1233.7
(1.2) 		1613.3
(3) 		1237
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191521_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1911
Sequence Type Exemplar sequence
Representative Public ID F26A3.4 NCBI
Target Description F26A3.4 /REP_DB=WormBase Gene ID /WP=CE09669 /TR=Q93592 /GB=CAB01700.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059732(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059732 NCBI Caenorhabditis elegans F26A3.4 (F26A3.4) mRNA, complete cds. 11/11 None
SNAP00000002470 ENSEMBL cdna:SNAP chromosome:CEL140:I:7665359:7666406:-1 11/11 None
GENEFINDER00000002479 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7665359:7666406:-1 11/11 None
F26A3.4.1 ENSEMBL cdna:known chromosome:CEL140:I:7665125:7666418:-1 gene:F26A3.4 11/11 None
F26A3.4.2 ENSEMBL cdna:known chromosome:CEL140:I:7665359:7666420:-1 gene:F26A3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7665289-7666337(-) 100.0 100.0
Public Domain and Genome References
Gene Title protein-tyrosine phosphatase
Ensembl F26A3.4
Entrez Gene 172525 Entrez gene
SwissProt Q93592 EMBL-EBI
WormBase CE09669 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4721 phosphoprotein phosphatase activity inferred from electronic annotation QuickGO AmiGO
8138 protein tyrosine/serine/threonine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01700 Hypothetical protein F26A3.4 [Caenorhabditis elegans] ref|NP_492133.1| F26A3.4 [Caenorhabditis elegans] 1.0E-127
blast CAE57345 Hypothetical protein CBG00285 [Caenorhabditis briggsae] 1.0E-122
Protein Domains
Database ID Description E-Value
Pfam IPR000340 EMBL-EBI Dual specificity protein phosphatase 9.7E-61
Sequence
Target Sequence 
>C. ELEGANS:191521_S_AT
atctgtggagtttctgcgttgagcaaagatgaaatgaagaaacataagatcacacatatc
ataaatgcaacaacagaagttccaaatctcagaagtcttggagacattcaacgtacaaaa
ctttggcttgaagatactccacagacatatatctatccacatcttgaacttcaatctgat
cagattcaagcactcattgctgatgggggaaaagttctcgtgcactgtgtcgccggagtg
tcacgttctgcttccatctgtttggctttcttgctcaaatatcgttgccgaaatcttcgt
gaagcttatcatttgatgaaatcaaagcgttcaatggttcgtccaaatcttggtttctgg
cgccaacttattgcttatgaacagaacgtcaaagaaaatgctggttctgttcgattggtg
agagatgaagctcaaccagaacaattacttcccgatgtttatcttaatattgcaattcca
gctagaccagctagcccggagcaagatccaaatatgatcccagatgagccacgagaacgc
cgaaattctggattcaaatctaaattccgtccagtgcttgaacct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTGTGGAGTTTCTGCGTTGAGCA 60 35 79 Antisense
ATATCTATCCACATCTTGAACTTCA 98 21 227 Antisense
GGAAAAGTTCTCGTGCACTGTGTCG 637 527 286 Antisense
ATCTGTTTGGCTTTCTTGCTCAAAT 573 33 334 Antisense
TCAAAGCGTTCAATGGTTCGTCCAA 377 627 400 Antisense
GTCCAAATCTTGGTTTCTGGCGCCA 565 477 419 Antisense
TCTGGCGCCAACTTATTGCTTATGA 361 607 434 Antisense
AAATGCTGGTTCTGTTCGATTGGTG 666 119 474 Antisense
ACAATTACTTCCCGATGTTTATCTT 270 115 519 Antisense
GATCCCAGATGAGCCACGAGAACGC 466 417 594 Antisense
TAAATTCCGTCCAGTGCTTGAACCT 550 639 639 Antisense
Sequence Source Affymetrix Proprietary Database