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[191518_at] 7TM chemoreceptor, str family

Description C09H5.5 /REP_DB=WormBase Gene ID /WP=CE08047 /GEN=str-144 /TR=O16330 /GB=AAB65390.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 38      4grp_total > 12      6grp_cgc > 08      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 220
1 2 3 4 range
A 87.4
(-0.7)
P 		46.4
(-2)
A 		14.4
(-3)
A 		202.7
(3)
P 		188
B 82.4
(-1.6)
P 		56.9
(-2.3)
M 		34.7
(-3)
A 		233.9
(3)
P 		199
C 102.4
(-0.8)
P 		66.9
(-1.9)
M 		33.3
(-3)
A 		219.9
(3)
P 		187
avr 90.7
(-1) 		56.7
(-2.1) 		27.5
(-3) 		218.8
(3) 		191

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 126.2
(3)
P 		49.3
(-1.6)
M 		43.5
(-2)
A 		26.1
(-3)
A 		43.7
(-1.9)
A 		87.1
(0.7)
P 		100
B 104.7
(3)
P 		56.9
(-1.3)
P 		37.7
(-3)
A 		56.8
(-1.3)
A 		69.2
(-0.2)
P 		79.6
(0.8)
P 		67
C 113.9
(3)
P 		60.9
(-1.1)
P 		36.6
(-3)
A 		76.2
(0.1)
A 		62.2
(-1)
P 		61.7
(-1.1)
P 		77
avr 114.9
(3) 		55.7
(-1.7) 		39.3
(-3) 		53
(-1.9) 		58.4
(-1.5) 		76.1
(-0.1) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 31.8
(3)
P 		10.1
(-1.7)
A 		3.8
(-3)
A 		29.7
(2.6)
P 		28
B 26.3
(-0.4)
P 		14.1
(-2.1)
M 		8
(-3)
A 		49.8
(3)
P 		42
C 33.9
(2.2)
P 		19.2
(-1.2)
M 		11.6
(-3)
A 		37.1
(3)
P 		26
avr 30.7
(1.4) 		14.5
(-1.7) 		7.8
(-3) 		38.9
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 23.3
(3)
P 		17.5
(0.9)
M 		9.5
(-2)
A 		6.6
(-3)
A 		13.2
(-0.6)
A 		21.2
(2.2)
P 		17
B 36.4
(3)
P 		19
(-0.8)
P 		9.2
(-3)
A 		15
(-1.7)
A 		28.1
(1.2)
P 		29.7
(1.5)
P 		27
C 42.2
(3)
P 		18.6
(-1.3)
P 		9.3
(-3)
A 		15.3
(-1.9)
A 		20.1
(-1)
P 		20.7
(-0.9)
P 		33
avr 34
(3) 		18.4
(-0.8) 		9.3
(-3) 		12.3
(-2.3) 		20.5
(-0.3) 		23.9
(0.5) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191518_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12423
Sequence Type Exemplar sequence
Representative Public ID C09H5.5 NCBI
Target Description C09H5.5 /REP_DB=WormBase Gene ID /WP=CE08047 /GEN=str-144 /TR=O16330 /GB=AAB65390.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072681(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072681 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-144) (str-144) mRNA, complete cds. 11/11 None
GENEFINDER00000035882 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8070839:8074356:-1 10/11 None
C09H5.5 ENSEMBL cdna:known chromosome:CEL140:V:8073249:8074735:-1 gene:C09H5.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035872 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8073309-8074736(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-144
Ensembl C09H5.5
Entrez Gene 192014 Entrez gene
SwissProt O16330 EMBL-EBI
WormBase CE08047 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65390 Seven tm receptor protein 144 [Caenorhabditis elegans] ref|NP_505082.1| Seven TM Receptor family member (str-144) [Caenorhabditis elegans] 0.0
blast AAB65389 Seven tm receptor protein 143 [Caenorhabditis elegans] ref|NP_505081.1| Seven TM Receptor family member (str-143) [Caenorhabditis elegans] 1.0E-161
blast CAE66143 Hypothetical protein CBG11373 [Caenorhabditis briggsae] 1.0E-152
blast AAB65389 Seven tm receptor protein 143 [Caenorhabditis elegans] ref|NP_505081.1| Seven TM Receptor family member (str-143) [Caenorhabditis elegans] 1.0E-151
blast AAB65390 Seven tm receptor protein 144 [Caenorhabditis elegans] ref|NP_505082.1| Seven TM Receptor family member (str-144) [Caenorhabditis elegans] 1.0E-132
blast CAE66143 Hypothetical protein CBG11373 [Caenorhabditis briggsae] 1.0E-119
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-126
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-126
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-126
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.3E-44
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505082.1 7 10-32,45-67,87-109,132-154,202-224,248-270,285-307
C09H5.5 7 10-32,45-67,87-109,132-154,202-224,248-270,285-307
GENEFINDER00000035882 11 20-42,66-88,136-158,182-204,219-241,262-284,294-316,344-366,381-403,481-503,513-535
Sequence
Target Sequence 
>C. ELEGANS:191518_AT
tgcatcgtatgctttgttctttggtttgcttgcgtctattttggaatgcacaatacgata
gaaaaacaacaatttatgagagatgtaatgtttgaaaactatgaagttgatataagccgg
gaatcttttatcgcaccgttatactggtcttataacaaagatggtgagcgagttctacga
tttcgtgatataataggatcttccggatgtacattcatattggtaacatgcttctccaca
atactgtattgcgctttcaaaatctactttagactcaaaagtgctcaagcattgatgagt
gctaaaacacgagaacttaatcggcagctgtttatcactctcacttttcagacacttctc
ccatttttcatgatgtattgccctgttggtacatttattactctaccattttttgaaatt
gaagttggtcaacttggaaactatgttggagcagccgctggaacatatccggctattgaa
ccagtcattgcaattttctgtatcaaggattttaggaaaactgtgctttgccagcgaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCATCGTATGCTTTGTTCTTTGGT 54 567 427 Antisense
TGTTCTTTGGTTTGCTTGCGTCTAT 570 561 441 Antisense
AGCCGGGAATCTTTTATCGCACCGT 205 83 541 Antisense
ATCGCACCGTTATACTGGTCTTATA 288 37 556 Antisense
GATGGTGAGCGAGTTCTACGATTTC 3 409 586 Antisense
GGATCTTCCGGATGTACATTCATAT 463 511 622 Antisense
ATATTGGTAACATGCTTCTCCACAA 324 19 643 Antisense
ACTTAATCGGCAGCTGTTTATCACT 73 103 741 Antisense
GGAGCAGCCGCTGGAACATATCCGG 305 521 874 Antisense
CATATCCGGCTATTGAACCAGTCAT 373 213 890 Antisense
GGAAAACTGTGCTTTGCCAGCGAAG 166 529 941 Antisense
Sequence Source Affymetrix Proprietary Database