[Home] | [Total List]

[191515_at] lysosomal carboxypeptidase

Description F19C7.2 /REP_DB=WormBase Gene ID /WP=CE04416 /TR=Q19589 /GB=AAA83508.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=lysosomal carboxypeptidase
Cluster 4grp_high_8_8 > 14      6grp_total > 88      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1775
1 2 3 4 range
A 313.7
(-3)
P 		394.4
(-2.7)
P 		481
(-2.4)
P 		2089
(3)
P 		1775
B 331.7
(-3)
P 		439.1
(-2.6)
P 		456.4
(-2.5)
P 		1994.2
(3)
P 		1663
C 318.5
(-3)
P 		329.8
(-2.9)
M 		565.7
(-1.8)
P 		1550.9
(3)
P 		1232
avr 321.3
(-3) 		387.8
(-2.7) 		501
(-2.3) 		1878
(3) 		1557

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 608
1 2 3 4 5 6 range
A 178.6
(-3)
A 		236.5
(-2.1)
A 		259.2
(-1.8)
P 		263.2
(-1.7)
M 		504.6
(1.9)
P 		580.6
(3)
P 		402
B 223.2
(-3)
A 		281.3
(-2.4)
P 		313.6
(-2)
P 		237.1
(-2.8)
P 		526.2
(0.3)
P 		774.7
(3)
P 		552
C 166.7
(-3)
A 		311.4
(-1.4)
P 		224.9
(-2.4)
A 		247.3
(-2.1)
P 		492.7
(0.6)
P 		715.1
(3)
P 		548
avr 189.5
(-3) 		276.4
(-2) 		265.9
(-2.1) 		249.2
(-2.3) 		507.8
(0.8) 		690.1
(3) 		501
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 339
1 2 3 4 range
A 114.2
(-2.2)
P 		85.6
(-3)
P 		125.7
(-1.9)
P 		305.8
(3)
P 		220
B 105.8
(-3)
P 		108.4
(-3)
P 		105.8
(-3)
P 		425
(3)
P 		319
C 105.4
(-2.6)
P 		94.8
(-3)
M 		197.2
(0.7)
P 		261.5
(3)
P 		167
avr 108.5
(-2.7) 		96.3
(-3) 		142.9
(-1.8) 		330.8
(3) 		235

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 256
1 2 3 4 5 6 range
A 32.9
(-3)
A 		84.1
(-0.4)
A 		56.4
(-1.8)
P 		66.8
(-1.3)
M 		152.3
(3)
P 		141.4
(2.5)
P 		119
B 77.6
(-2.6)
A 		93.6
(-2.2)
P 		76.2
(-2.6)
P 		62.8
(-3)
P 		213.8
(1)
P 		288.9
(3)
P 		226
C 61.8
(-2.6)
A 		95
(-1.6)
P 		57.3
(-2.8)
A 		49.7
(-3)
P 		159.4
(0.5)
P 		239.4
(3)
P 		190
avr 57.4
(-3) 		90.9
(-1.8) 		63.3
(-2.8) 		59.8
(-2.9) 		175.2
(1.3) 		223.2
(3) 		166
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191515_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10983
Sequence Type Exemplar sequence
Representative Public ID F19C7.2 NCBI
Target Description F19C7.2 /REP_DB=WormBase Gene ID /WP=CE04416 /TR=Q19589 /GB=AAA83508.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=lysosomal carboxypeptidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068194(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068194 NCBI Caenorhabditis elegans F19C7.2 (F19C7.2) mRNA, complete cds. 11/11 None
GENEFINDER00000030506 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4599946:4602714:1 11/11 None
F19C7.2 ENSEMBL cdna:known chromosome:CEL140:IV:4599945:4602741:1 gene:F19C7.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030497 4/11 Cross Hyb Matching Probes None
SNAP00000030498 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4599951-4602720(+) 100.0 100.0
Public Domain and Genome References
Gene Title lysosomal carboxypeptidase
Ensembl F19C7.2
Entrez Gene 184678 Entrez gene
SwissProt Q19589 EMBL-EBI
WormBase CE04416 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8236 serine-type peptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA83508 Hypothetical protein F19C7.2 [Caenorhabditis elegans] ref|NP_500595.1| F19C7.2 [Caenorhabditis elegans] 0.0
blast AAA83509 Hypothetical protein F19C7.4 [Caenorhabditis elegans] ref|NP_500596.2| F19C7.4 [Caenorhabditis elegans] 0.0
blast CAE58551 Hypothetical protein CBG01710 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008758 EMBL-EBI Peptidase S28 7.9E-64
Pfam IPR008758 EMBL-EBI Peptidase S28 5.2E-82
Sequence
Target Sequence 
>C. ELEGANS:191515_AT
gatgtcgcccgaataattacacagcttttattcaagcttatagcgacactaccatgcccg
atgatgatactatcagcactcgcagctggatctggcaaacttgtacagagctcggatatt
atcagaccactgacggaggaaatggtggaatctttggatcaacagtaccacttgatttct
tcgccgatcaatgcattgatctctttggtcctgaatacaccctggataacactttcaaac
tcgtagatcaagttcgcacaaaatacggaggagctgatgcgtaccgtggaaccaatgttt
gcttcccaaatggttctttcgatccatggcaaggcctcggccacacggcaaatatcacaa
ataataatgttgattcgtggttgatcgatggaacagctcattgtgctgatatgtatccag
caagagattctgataagcaatcattgaaagatgcgagagtccggattcatggtcatttat
cgaggtggctatcagatgcacaggctattaggactgcaggttcatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGTCGCCCGAATAATTACACAGC 364 407 1181 Antisense
GACACTACCATGCCCGATGATGATA 444 367 1225 Antisense
GATGATACTATCAGCACTCGCAGCT 69 411 1243 Antisense
CACTCGCAGCTGGATCTGGCAAACT 652 197 1257 Antisense
GATCTCTTTGGTCCTGAATACACCC 369 419 1378 Antisense
AGCTGATGCGTACCGTGGAACCAAT 603 81 1452 Antisense
GTTTGCTTCCCAAATGGTTCTTTCG 555 449 1477 Antisense
TTTCGATCCATGGCAAGGCCTCGGC 282 669 1497 Antisense
CCTCGGCCACACGGCAAATATCACA 595 267 1515 Antisense
GAGGTGGCTATCAGATGCACAGGCT 62 403 1662 Antisense
GGCTATTAGGACTGCAGGTTCATCA 117 537 1683 Antisense
Sequence Source Affymetrix Proprietary Database