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[191514_at] 7TM receptor, srx family

Description F09F3.11 /REP_DB=WormBase Gene ID /WP=CE09293 /TR=P90824 /GB=CAB02908.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster 6grp_total > 34      4grp_total > 13      6grp_cgc > 34      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 68
(-0.3)
P 		61.1
(-0.7)
A 		27.2
(-3)
A 		117
(3)
P 		90
B 77
(-0.7)
M 		56.5
(-1.9)
A 		37.9
(-3)
A 		138
(3)
P 		100
C 108.8
(2.4)
P 		47.5
(-2)
A 		33.7
(-3)
A 		117.1
(3)
P 		83
avr 84.6
(0.4) 		55
(-1.5) 		32.9
(-3) 		124
(3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 78
(3)
A 		48.4
(-1.9)
A 		70.7
(1.8)
P 		60.8
(0.1)
A 		55.1
(-0.8)
A 		41.9
(-3)
A 		36
B 63.4
(1.8)
P 		54.3
(0.8)
A 		73.1
(3)
A 		22.5
(-3)
A 		31.6
(-1.9)
A 		37.9
(-1.2)
A 		51
C 34.3
(-2.1)
A 		87.3
(3)
P 		55.6
(-0)
A 		31.5
(-2.3)
A 		24.5
(-3)
A 		30
(-2.5)
A 		63
avr 58.6
(1.4) 		63.3
(2.4) 		66.5
(3) 		38.3
(-2.7) 		37.1
(-2.9) 		36.6
(-3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 24.8
(3)
P 		13.3
(-0.9)
A 		7.1
(-3)
A 		17.1
(0.4)
P 		18
B 24.6
(1.6)
M 		13.9
(-1.5)
A 		8.8
(-3)
A 		29.4
(3)
P 		21
C 36
(3)
P 		13.6
(-2.5)
A 		11.7
(-3)
A 		19.7
(-1)
P 		24
avr 28.5
(3) 		13.6
(-1.6) 		9.2
(-3) 		22.1
(1) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 14.4
(0.6)
A 		17.2
(3)
A 		15.4
(1.5)
P 		15.4
(1.5)
A 		16.6
(2.5)
A 		10.2
(-3)
A 		7
B 22.1
(3)
P 		18.1
(1.5)
A 		17.7
(1.4)
A 		6
(-3)
A 		12.9
(-0.4)
A 		14.1
(0)
A 		16
C 12.7
(-1.1)
A 		26.6
(3)
P 		14.2
(-0.7)
A 		6.3
(-3)
A 		7.9
(-2.5)
A 		10
(-1.9)
A 		20
avr 16.4
(0.8) 		20.6
(3) 		15.8
(0.5) 		9.2
(-3) 		12.5
(-1.3) 		11.4
(-1.8) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191514_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13858
Sequence Type Exemplar sequence
Representative Public ID F09F3.11 NCBI
Target Description F09F3.11 /REP_DB=WormBase Gene ID /WP=CE09293 /TR=P90824 /GB=CAB02908.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074035(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074035 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-135) (srx-135) mRNA, complete cds. 11/11 None
GENEFINDER00000022400 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13859189:13863910:1 9/11 None
F09F3.11 ENSEMBL cdna:known chromosome:CEL140:V:13861890:13863910:1 gene:F09F3.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13862077-13863738(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, srx family
Gene Symbol srx-135
Ensembl F09F3.11
Entrez Gene 184256 Entrez gene
SwissProt P90824 EMBL-EBI
WormBase CE36286 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02908 Hypothetical protein F09F3.11 [Caenorhabditis elegans] ref|NP_506436.2| Serpentine Receptor, class X family member (srx-135) [Caenorhabditis elegans] 1.0E-151
blast CAB02907 Hypothetical protein F09F3.12 [Caenorhabditis elegans] ref|NP_506435.2| Serpentine Receptor, class X family member (srx-136) [Caenorhabditis elegans] 1.0E-126
blast CAB02908 Hypothetical protein F09F3.11 [Caenorhabditis elegans] ref|NP_506436.2| Serpentine Receptor, class X family member (srx-135) [Caenorhabditis elegans] 1.0E-123
blast CAE66220 Hypothetical protein CBG11462 [Caenorhabditis briggsae] 3.0E-60
blast CAB02909 Hypothetical protein F09F3.13 [Caenorhabditis elegans] ref|NP_506437.1| Serpentine Receptor, class X family member (srx-137) [Caenorhabditis elegans] 2.0E-57
blast CAE65808 Hypothetical protein CBG10916 [Caenorhabditis briggsae] 1.0E-54
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506436.2 5 7-29,66-88,109-131,151-173,236-258
F09F3.11 5 7-29,66-88,109-131,151-173,236-258
GENEFINDER00000022400 7 33-55,70-92,112-134,282-304,345-367,387-409,484-506
Sequence
Target Sequence 
>C. ELEGANS:191514_AT
aactgccgggtttggcgcatatgtcacaggaccaatactggagctattcatgtctttgaa
tagatttgcagcattgtactttgcaactagacacctacgtataagcgactttccaataac
aggaattgctataattggagcctttgcagtagctattctgtacacatgcctaggctttag
accaaattgcggatttgtgttctatccggctacatttacttgggataaagagtacacacc
ctgtgcaactgggatgtcttcattaatattttattcagtggttgctattgccacgtggac
caattgtttgaatgtagccacagcattcaagttgtccattggaaaagttgctggaatgaa
tcaagccgatgcacatcgacggaaaaagaagttgattttgatgttcacacaaagtgtcat
tcaagactgtcttcacgtgatagatctcatcaacagcatcttcatattcaaactaagcga
tgctctttggtttcagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTGCCGGGTTTGGCGCATATGTC 373 141 168 Antisense
GACACCTACGTATAAGCGACTTTCC 271 333 257 Antisense
GGAGCCTTTGCAGTAGCTATTCTGT 517 521 304 Antisense
GCTATTCTGTACACATGCCTAGGCT 660 303 319 Antisense
GTTCTATCCGGCTACATTTACTTGG 3 445 366 Antisense
GTACACACCCTGTGCAACTGGGATG 339 459 399 Antisense
TGGTTGCTATTGCCACGTGGACCAA 84 551 446 Antisense
GTAGCCACAGCATTCAAGTTGTCCA 121 457 481 Antisense
GACTGTCTTCACGTGATAGATCTCA 297 375 592 Antisense
ATCTCATCAACAGCATCTTCATATT 259 33 611 Antisense
CTAAGCGATGCTCTTTGGTTTCAGT 612 223 640 Antisense
Sequence Source Affymetrix Proprietary Database