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[191513_s_at] 7TM chemoreceptor, str family /// 7TM chemoreceptor, str family

Description C01B4.10 /REP_DB=WormBase Gene ID /WP=CE20479 /GEN=str-76 /TR=Q9UAU0 /GB=AAD14692.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 55      4grp_total > 25      6grp_cgc > 55      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 5.1
(-3)
A 		55.1
(1.2)
A 		76.3
(3)
A 		65.8
(2.1)
P 		71
B 21.7
(-1.6)
A 		64.3
(3)
A 		8.4
(-3)
A 		57.7
(2.3)
P 		56
C 10.6
(-3)
A 		46.8
(-0.5)
A 		30.9
(-1.6)
A 		98.2
(3)
A 		88
avr 12.5
(-3) 		55.4
(1.2) 		38.5
(-0.5) 		73.9
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 28.3
(0.5)
A 		32.5
(1.1)
A 		46.1
(3)
A 		45.5
(2.9)
A 		3.1
(-3)
A 		28.6
(0.6)
A 		43
B 6
(-2.2)
A 		36
(3)
A 		30.7
(2.1)
A 		10.5
(-1.4)
A 		1.4
(-3)
A 		25.2
(1.1)
A 		35
C 21.3
(-0.5)
A 		43.8
(3)
A 		34.9
(1.6)
A 		5.3
(-3)
A 		26.7
(0.3)
A 		32.1
(1.2)
A 		39
avr 18.5
(-1.2) 		37.4
(3) 		37.2
(3) 		20.4
(-0.8) 		10.4
(-3) 		28.6
(1) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 1.9
(-3)
A 		12
(0.3)
A 		20
(3)
A 		9.6
(-0.4)
P 		18
B 6.9
(-0.9)
A 		15.9
(3)
A 		1.9
(-3)
A 		12.3
(1.5)
P 		14
C 3.5
(-3)
A 		13.4
(1.5)
A 		10.8
(0.3)
A 		16.6
(3)
A 		13
avr 4.1
(-3) 		13.8
(3) 		10.9
(1.2) 		12.8
(2.4) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 5.2
(-0.6)
A 		11.5
(3)
A 		10
(2.2)
A 		11.5
(3)
A 		0.9
(-3)
A 		7
(0.5)
A 		11
B 2.1
(-2.2)
A 		12
(3)
A 		7.5
(0.6)
A 		2.8
(-1.8)
A 		0.6
(-3)
A 		9.4
(1.6)
A 		11
C 7.9
(0.3)
A 		13.4
(3)
A 		8.9
(0.8)
A 		1.1
(-3)
A 		8.6
(0.7)
A 		10.8
(1.7)
A 		12
avr 5.1
(-1.9) 		12.3
(3) 		8.8
(0.6) 		5.1
(-1.9) 		3.4
(-3) 		9.1
(0.8) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191513_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15150
Sequence Type Exemplar sequence
Representative Public ID C01B4.10 NCBI
Target Description C01B4.10 /REP_DB=WormBase Gene ID /WP=CE20479 /GEN=str-76 /TR=Q9UAU0 /GB=AAD14692.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071259(11), NM_071286(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071259 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-265) (str-265) mRNA, complete cds. 11/11 None
NM_071286 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-76) (str-76) mRNA, complete cds. 11/11 None
SNAP00000008432 ENSEMBL cdna:SNAP chromosome:CEL140:V:2498984:2515025:-1 11/11 None
SNAP00000029973 ENSEMBL cdna:SNAP chromosome:CEL140:V:2390705:2406746:-1 11/11 None
Y19D10A.13 ENSEMBL cdna:known chromosome:CEL140:V:2405783:2407142:-1 gene:Y19D10A.13 11/11 None
C01B4.10 ENSEMBL cdna:known chromosome:CEL140:V:2514062:2515421:-1 gene:C01B4.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2405782-2407142(-) 100.0 100.0
chrV:2514061-2515421(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
7TM chemoreceptor, str family
Gene Symbol str-76
str-265
Ensembl Y19D10A.13
C01B4.10
Entrez Gene 189490 Entrez gene
191987 Entrez gene
SwissProt Q9UAU0 EMBL-EBI
WormBase CE20479 Wormbase
CE20479 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD14692 Seven tm receptor protein 76 [Caenorhabditis elegans] ref|NP_503687.1| Seven TM Receptor family member (str-76) [Caenorhabditis elegans] ref|NP_503660.1| Seven TM Receptor family member (str-265) [Caenorhabditis elegans] gb|AAK68413.1| Hypothetical protein Y19D10A.13 [Caenorhabditis elegans] 0.0
blast CAA90737 Hypothetical protein C14H10.4 [Caenorhabditis elegans] ref|NP_509720.1| Seven TM Receptor family member (str-74) [Caenorhabditis elegans] 1.0E-138
blast CAB03407 Hypothetical protein T23F1.4 [Caenorhabditis elegans] ref|NP_506847.1| Seven TM Receptor family member (str-71) [Caenorhabditis elegans] 1.0E-102
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503660.1 8 7-29,44-66,90-112,132-154,167-184,197-219,246-268,283-305
NP_503687.1 8 7-29,44-66,90-112,132-154,167-184,197-219,246-268,283-305
Y19D10A.13 8 7-29,44-66,90-112,132-154,167-184,197-219,246-268,283-305
C01B4.10 8 7-29,44-66,90-112,132-154,167-184,197-219,246-268,283-305
SNAP00000008432 5 5-22,35-52,65-87,114-136,151-173
SNAP00000029973 5 5-22,35-52,65-87,114-136,151-173
Sequence
Target Sequence 
>C. ELEGANS:191513_S_AT
ccaggagcactgtattcggggtcattttatatattctgtttaccagacaatgcggcagat
tcctatgtcagagaggaaatactaatcaactacggactagtgataacagaagttccacgg
ttcttagctctaccgtacaatccggataatacagtgagatggagcagcgtttattatttt
gtcggtgcagtttcaattgtatcagttcattacgctgtcattttttactatggcttgaaa
atgcacttcaacatgaaacagcagctcttgaagttctcatccaaaaaccgaaagcttcaa
cgtcaatttttcaaggcgttagtttttcaaagcatcggcccgacggtatttttgatagta
ccagctgtcccagtcttactctgtcccgtaattggatcagattttcatttgaagttcagt
tggcagacgggatggttgtattctctaattggactttaccctccatttgatagcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAGGAGCACTGTATTCGGGGTCAT 570 271 433 Antisense
CAATGCGGCAGATTCCTATGTCAGA 509 181 480 Antisense
GGTTCTTAGCTCTACCGTACAATCC 181 507 551 Antisense
GTTCATTACGCTGTCATTTTTTACT 162 445 637 Antisense
ACAGCAGCTCTTGAAGTTCTCATCC 338 109 690 Antisense
GTTAGTTTTTCAAAGCATCGGCCCG 579 443 750 Antisense
GCATCGGCCCGACGGTATTTTTGAT 149 301 764 Antisense
TTTTTGATAGTACCAGCTGTCCCAG 685 673 781 Antisense
GTCTTACTCTGTCCCGTAATTGGAT 499 467 805 Antisense
GACGGGATGGTTGTATTCTCTAATT 393 377 858 Antisense
GACTTTACCCTCCATTTGATAGCAT 337 371 884 Antisense
Sequence Source Affymetrix Proprietary Database