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[191511_at] 7TM chemoreceptor, sri family

Description C14C6.10 /REP_DB=WormBase Gene ID /WP=CE25777 /GEN=sri-73 /TR=O44676 /GB=AAB94259.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 32      4grp_total > 01      6grp_cgc > 71      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 48.1
(0.2)
A 		34.8
(-2.9)
A 		34.4
(-3)
A 		60
(3)
A 		26
B 37.5
(-0.9)
A 		23
(-3)
A 		42.2
(-0.2)
A 		64
(3)
A 		41
C 23.7
(-3)
A 		30
(-2.4)
A 		33.1
(-2.2)
A 		91
(3)
A 		67
avr 36.4
(-2) 		29.3
(-3) 		36.6
(-2) 		71.7
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 20.3
(-2.8)
A 		30.4
(-1.3)
A 		60.2
(3)
P 		18.6
(-3)
A 		57.6
(2.6)
A 		28.3
(-1.6)
A 		42
B 44
(2.9)
A 		32.8
(1.4)
A 		44.7
(3)
A 		21.6
(-0.2)
A 		9.7
(-1.8)
A 		1.1
(-3)
A 		44
C 43.3
(1.3)
A 		41.4
(1.1)
A 		15.9
(-1.7)
A 		58.9
(3)
A 		3.5
(-3)
A 		21.7
(-1)
A 		55
avr 35.9
(1.9) 		34.9
(1.6) 		40.3
(3) 		33
(1.1) 		23.6
(-1.3) 		17
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 17.5
(3)
A 		7.6
(-3)
A 		9
(-2.2)
A 		8.8
(-2.3)
A 		10
B 12
(1.8)
A 		5.7
(-3)
A 		9.8
(0.1)
A 		13.6
(3)
A 		8
C 7.8
(-3)
A 		8.6
(-2.4)
A 		11.5
(-0)
A 		15.3
(3)
A 		8
avr 12.4
(2.8) 		7.3
(-3) 		10.1
(0.2) 		12.6
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 3.7
(-3)
A 		10.8
(0.1)
A 		13.1
(1.1)
P 		4.7
(-2.6)
A 		17.4
(3)
A 		6.9
(-1.6)
A 		14
B 15.3
(3)
A 		10.9
(1.2)
A 		10.9
(1.2)
A 		5.7
(-0.9)
A 		3.9
(-1.6)
A 		0.4
(-3)
A 		15
C 16
(3)
A 		12.6
(1.6)
A 		4
(-1.8)
A 		11.8
(1.3)
A 		1.1
(-3)
A 		7.3
(-0.5)
A 		15
avr 11.7
(3) 		11.4
(2.7) 		9.3
(0.9) 		7.4
(-0.8) 		7.5
(-0.7) 		4.9
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191511_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15737
Sequence Type Exemplar sequence
Representative Public ID C14C6.10 NCBI
Target Description C14C6.10 /REP_DB=WormBase Gene ID /WP=CE25777 /GEN=sri-73 /TR=O44676 /GB=AAB94259.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070846(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070846 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-73) (sri-73) mRNA, complete cds. 11/11 None
C14C6.10 ENSEMBL cdna:known chromosome:CEL140:V:564220:565913:-1 gene:C14C6.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:564323-565913(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-73
Ensembl C14C6.10
Entrez Gene 191929 Entrez gene
SwissProt O44676 EMBL-EBI
WormBase CE33600 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB94259 Serpentine receptor, class i protein 73 [Caenorhabditis elegans] ref|NP_503247.2| Serpentine Receptor, class I family member (sri-73) [Caenorhabditis elegans] 1.0E-161
blast T32700 hypothetical protein C14C6.11 - Caenorhabditis elegans 1.0E-103
blast AAB95004 Serpentine receptor, class i protein 74 [Caenorhabditis elegans] ref|NP_494299.1| Serpentine Receptor, class I family member (sri-74) [Caenorhabditis elegans] 5.0E-86
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 8.6E-85
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503247.2 7 13-35,47-69,89-111,132-154,191-213,243-265,275-297
C14C6.10 7 13-35,47-69,89-111,132-154,191-213,243-265,275-297
Sequence
Target Sequence 
>C. ELEGANS:191511_AT
atcaagccatcgcaacgattctcgaaatacacgtgcttcccgacatcattttatacactt
gttactttctttgcgtattttgtccgctaattttttgtggtgttgtgaattacttgaatt
tggatagagaacaaagcttggtgttcatcaagcagaactacccagaacactacataaact
tttcgaaactttctcattttgcactttatgtgagttctccggttatatatgtcgtattcg
gtatggcaatttttggaggattgctcttttttgtattattactcatgtttaccattgata
tattctctatgatgactaatttaaagcaaaaaatttcaaaatccacgtatgagaagcatc
aagacgctcttcgcagcttgatggttcagtttgtgacagctatgctgtgtctggcgcctc
caatttttctaacattggtcttaatttttgaggttccacatgtgaatgttattggtgaaa
ttttgattgcctggtttgcgagtcatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAAGCCATCGCAACGATTCTCGA 399 25 362 Antisense
GATTCTCGAAATACACGTGCTTCCC 102 433 378 Antisense
GTGCTTCCCGACATCATTTTATACA 663 479 394 Antisense
TATACACTTGTTACTTTCTTTGCGT 667 659 413 Antisense
TTGCGTATTTTGTCCGCTAATTTTT 375 701 432 Antisense
AGCAGAACTACCCAGAACACTACAT 504 77 512 Antisense
GAAACTTTCTCATTTTGCACTTTAT 192 357 546 Antisense
GAGAAGCATCAAGACGCTCTTCGCA 332 391 712 Antisense
GCTCTTCGCAGCTTGATGGTTCAGT 376 301 727 Antisense
TGACAGCTATGCTGTGTCTGGCGCC 370 571 755 Antisense
TTGATTGCCTGGTTTGCGAGTCATT 566 705 844 Antisense
Sequence Source Affymetrix Proprietary Database