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[191508_at]

Description F26F12.6 /REP_DB=WormBase Gene ID /WP=CE17715 /GEN=srh-76 /TR=Q19814 /GB=AAC25893.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 38      4grp_total > 20      6grp_cgc > 18      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 31.6
(-3)
A 		42.4
(-1.4)
A 		51.3
(-0.2)
A 		73.3
(3)
A 		42
B 40.1
(-3)
A 		65.8
(3)
A 		42
(-2.6)
A 		46.4
(-1.5)
A 		26
C 74.8
(1.2)
M 		39.6
(-0.9)
A 		5.7
(-3)
A 		104
(3)
A 		98
avr 48.8
(-0.7) 		49.3
(-0.6) 		33
(-3) 		74.6
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 21.8
(-1.4)
A 		23.2
(-1.2)
A 		44.9
(1.7)
A 		9.8
(-3)
A 		16.6
(-2.1)
A 		54.3
(3)
A 		45
B 56.8
(3)
M 		26.7
(-0.8)
A 		9.8
(-3)
A 		26.3
(-0.9)
A 		21.3
(-1.5)
A 		36.8
(0.4)
A 		47
C 38.8
(0.8)
A 		58.1
(3)
P 		5.7
(-2.8)
A 		4.3
(-3)
A 		37.2
(0.7)
A 		25.2
(-0.7)
A 		54
avr 39.1
(3) 		36
(2.3) 		20.1
(-1.5) 		13.5
(-3) 		25
(-0.3) 		38.8
(2.9) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 11.5
(0.3)
A 		9.2
(-3)
A 		13.4
(3)
A 		10.7
(-0.9)
A 		4
B 12.8
(-0.2)
A 		16.3
(3)
A 		9.7
(-3)
A 		9.9
(-2.8)
A 		7
C 24.8
(3)
M 		11.4
(-0.5)
A 		2
(-3)
A 		17.5
(1.1)
A 		23
avr 16.4
(3) 		12.3
(-0.1) 		8.4
(-3) 		12.7
(0.2) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 4
(-2.2)
A 		8.3
(0.3)
A 		9.8
(1.1)
A 		2.5
(-3)
A 		5
(-1.6)
A 		13.2
(3)
A 		11
B 19.8
(3)
M 		8.9
(-0.8)
A 		2.4
(-3)
A 		7
(-1.4)
A 		8.7
(-0.8)
A 		13.7
(0.9)
A 		17
C 14.4
(1.8)
A 		17.7
(3)
P 		1.4
(-2.8)
A 		0.9
(-3)
A 		12
(1)
A 		8.4
(-0.3)
A 		17
avr 12.7
(3) 		11.6
(2.3) 		4.5
(-2.3) 		3.5
(-3) 		8.6
(0.3) 		11.8
(2.4) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191508_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11869
Sequence Type Exemplar sequence
Representative Public ID F26F12.6 NCBI
Target Description F26F12.6 /REP_DB=WormBase Gene ID /WP=CE17715 /GEN=srh-76 /TR=Q19814 /GB=AAC25893.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028689(11), NM_001028688(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028689 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-76) (srh-76) mRNA, complete cds. 11/11 None
NM_001028688 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-76) (srh-76) mRNA, complete cds. 9/11 None
F26F12.6 ENSEMBL cdna:known chromosome:CEL140:V:5836813:5837766:1 gene:F26F12.6 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5836529-5837731(+) 100.0 100.0
Public Domain and Genome References
Ensembl F26F12.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001023860 Serpentine Receptor, class H family member (srh-76) [Caenorhabditis elegans] gb|AAX88832.1| Serpentine receptor, class h protein 76, isoform b [Caenorhabditis elegans] 1.0E-169
blast CAE64561 Hypothetical protein CBG09311 [Caenorhabditis briggsae] 5.0E-51
blast AAC26911 Serpentine receptor, class h protein 79 [Caenorhabditis elegans] ref|NP_504930.1| Serpentine Receptor, class H family member (srh-79) [Caenorhabditis elegans] 2.0E-42
blast NP_001023859 Serpentine Receptor, class H family member (srh-76) [Caenorhabditis elegans] gb|AAC25893.2| Serpentine receptor, class h protein 76, isoform a [Caenorhabditis elegans] 1.0E-29
blast NP_001023860 Serpentine Receptor, class H family member (srh-76) [Caenorhabditis elegans] gb|AAX88832.1| Serpentine receptor, class h protein 76, isoform b [Caenorhabditis elegans] 9.0E-26
blast CAE64561 Hypothetical protein CBG09311 [Caenorhabditis briggsae] 2.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 9.3E-29
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023860.1 7 33-55,75-97,112-131,151-173,212-234,259-278,298-320
NP_001023859.1 2 7-29,39-58
F26F12.6 2 7-29,39-58
Sequence
Target Sequence 
>C. ELEGANS:191508_AT
tacacttcgaatttcaacatcctgggttcgatacttggttactagtgccaactatttggt
ttctttcagttttccgattccatttttgtttaatatcccaaaccaggaatcagcaaaact
cctcattttacaaaatgtaccttgtccacaagaggaattcttcactttgagtgttttctc
aatatctacagatgctaactttagattgatatacatggtttcaatgctcatatttctatg
ttctacattcgttcaacttttattttatgcattcacttgcttacgatatcttgtcttttc
aaaatcaagtagcttttcaaaaagaacaatcgaactgcagaaaaagttttttattggaat
tctcattcaagttcttgttccatatgcattcatagtgccttcagtgtcatattgctgcta
ttcggtttattcgaattattataatcaaatgctcaacaactttttcgttttggttttcaa
cttctatggaacggtatcaacaataggacttatatcttgtcatacagcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACACTTCGAATTTCAACATCCTGG 328 643 441 Antisense
AACATCCTGGGTTCGATACTTGGTT 126 137 456 Antisense
TCAGTTTTCCGATTCCATTTTTGTT 645 623 506 Antisense
GAATCAGCAAAACTCCTCATTTTAC 483 327 547 Antisense
TATGTTCTACATTCGTTCAACTTTT 44 657 677 Antisense
GCATTCACTTGCTTACGATATCTTG 266 307 709 Antisense
AAGTTCTTGTTCCATATGCATTCAT 613 155 809 Antisense
CATTCATAGTGCCTTCAGTGTCATA 188 215 827 Antisense
GTGTCATATTGCTGCTATTCGGTTT 45 487 844 Antisense
TGCTCAACAACTTTTTCGTTTTGGT 586 559 890 Antisense
AGGACTTATATCTTGTCATACAGCG 539 55 945 Antisense
Sequence Source Affymetrix Proprietary Database