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[191507_at]

Description D1065.4 /REP_DB=WormBase Gene ID /WP=CE09054 /GEN=srh-210 /TR=O16195 /GB=AAG24021.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 12      4grp_total > 01      6grp_cgc > 62      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 175
1 2 3 4 range
A 60
(-1.9)
P 		27.8
(-3)
A 		75.8
(-1.3)
P 		198.1
(3)
P 		170
B 80.8
(0.5)
P 		45.1
(-3)
A 		67.5
(-0.8)
A 		106
(3)
P 		61
C 72.3
(-1)
P 		23.1
(-3)
A 		44.7
(-2.1)
A 		170
(3)
P 		147
avr 71
(-1.1) 		32
(-3) 		62.7
(-1.5) 		158
(3) 		126

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 39.6
(-1.5)
P 		62.1
(3)
A 		52.8
(1.1)
P 		40.3
(-1.4)
A 		57.6
(2.1)
A 		32.2
(-3)
A 		30
B 58.9
(2.9)
M 		27.7
(-1.6)
A 		22.8
(-2.4)
A 		59.9
(3)
P 		18.3
(-3)
A 		26.6
(-1.8)
A 		42
C 55.4
(-0.5)
A 		99.8
(3)
P 		59.4
(-0.2)
P 		38.1
(-1.9)
A 		33.3
(-2.3)
A 		23.9
(-3)
A 		76
avr 51.3
(1) 		63.2
(3) 		45
(-0.1) 		46.1
(0.1) 		36.4
(-1.5) 		27.6
(-3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 21.9
(1.1)
P 		6
(-3)
A 		19.8
(0.6)
P 		29
(3)
P 		23
B 25.8
(3)
P 		11.1
(-3)
A 		15.6
(-1.2)
A 		22.6
(1.7)
P 		15
C 23.9
(1.7)
P 		6.7
(-3)
A 		15.6
(-0.6)
A 		28.7
(3)
P 		22
avr 23.9
(2.1) 		7.9
(-3) 		17
(-0.1) 		26.8
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 7.3
(-3)
P 		22.1
(3)
A 		11.5
(-1.3)
P 		10.2
(-1.8)
A 		17.4
(1.1)
A 		7.8
(-2.8)
A 		15
B 20.5
(3)
M 		9.2
(-1.5)
A 		5.5
(-3)
A 		15.9
(1.2)
P 		7.5
(-2.2)
A 		9.9
(-1.2)
A 		15
C 20.5
(0.4)
A 		30.5
(3)
P 		15.1
(-1.1)
P 		7.7
(-3)
A 		10.8
(-2.2)
A 		8
(-2.9)
A 		23
avr 16.1
(0.8) 		20.6
(3) 		10.7
(-2) 		11.3
(-1.7) 		11.9
(-1.4) 		8.6
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191507_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15948
Sequence Type Exemplar sequence
Representative Public ID D1065.4 NCBI
Target Description D1065.4 /REP_DB=WormBase Gene ID /WP=CE09054 /GEN=srh-210 /TR=O16195 /GB=AAG24021.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028577(11), NM_001028576(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028577 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-210) (srh-210) mRNA, complete cds. 11/11 None
NM_001028576 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-210) (srh-210) mRNA, complete cds. 10/11 None
SNAP00000024537 ENSEMBL cdna:SNAP chromosome:CEL140:V:4063171:4071355:-1 11/11 None
GENEFINDER00000024542 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4069237:4071214:-1 10/11 None
D1065.4b ENSEMBL cdna:known chromosome:CEL140:V:4069237:4071355:-1 gene:D1065.4 11/11 None
D1065.4a ENSEMBL cdna:known chromosome:CEL140:V:4069268:4071355:-1 gene:D1065.4 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4069236-4071355(-) 100.0 100.0
Public Domain and Genome References
Ensembl D1065.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001023748 Serpentine Receptor, class H family member (srh-210) [Caenorhabditis elegans] gb|AAW88405.1| Serpentine receptor, class h protein 210, isoform b [Caenorhabditis elegans] 1.0E-179
blast NP_001023748 Serpentine Receptor, class H family member (srh-210) [Caenorhabditis elegans] gb|AAW88405.1| Serpentine receptor, class h protein 210, isoform b [Caenorhabditis elegans] 1.0E-168
blast NP_001023748 Serpentine Receptor, class H family member (srh-210) [Caenorhabditis elegans] gb|AAW88405.1| Serpentine receptor, class h protein 210, isoform b [Caenorhabditis elegans] 1.0E-148
blast NP_001023747 Serpentine Receptor, class H family member (srh-210) [Caenorhabditis elegans] gb|AAG24021.2| Serpentine receptor, class h protein 210, isoform a [Caenorhabditis elegans] 1.0E-132
blast NP_001023748 Serpentine Receptor, class H family member (srh-210) [Caenorhabditis elegans] gb|AAW88405.1| Serpentine receptor, class h protein 210, isoform b [Caenorhabditis elegans] 1.0E-116
blast NP_001023747 Serpentine Receptor, class H family member (srh-210) [Caenorhabditis elegans] gb|AAG24021.2| Serpentine receptor, class h protein 210, isoform a [Caenorhabditis elegans] 1.0E-114
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.3E-104
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023748.1 7 20-42,55-77,97-119,139-158,202-221,241-263,278-297
NP_001023747.1 4 20-42,55-77,97-119,139-158
D1065.4b 7 20-42,55-77,97-119,139-158,202-221,241-263,278-297
D1065.4a 4 20-42,55-77,97-119,139-158
SNAP00000024537 7 20-42,55-77,97-119,139-158,202-221,241-263,278-297
GENEFINDER00000024542 6 13-35,50-72,92-111,167-186,206-228,243-262
Sequence
Target Sequence 
>C. ELEGANS:191507_AT
gagcaagggctggacgagatttcgtaaagcgtttatcgggattttgcacgttgtagcttg
gacatattttataccattcaccctcactacgcctgaccaggcagtcgctggacctgcaat
tctacagagacttcccactcttcgttgtttctattctgacgatatatttgtacttacaca
agatgcaacattagttggctggagtactgtaacaaaactagtcattgagtttgttttcat
aattattctcgttgtactcacattcaatacaattatcaaacagaataaaaatgcggtgct
ctccaaaaacacaatggcacttcaaaaaaagtttttcgtatcgattaccatccaaacagt
gattccgttttttatcattctggtccctctctgctattgtgggtactcacttggtaaaat
gtattataatcaagctttgaataacatatcatttcttgttatatcatctcatggtctggt
atcaactattgctatgtctcttattcacgagccgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCAAGGGCTGGACGAGATTTCGT 552 389 399 Antisense
GGATTTTGCACGTTGTAGCTTGGAC 341 509 437 Antisense
GACATATTTTATACCATTCACCCTC 582 369 459 Antisense
CACTACGCCTGACCAGGCAGTCGCT 172 197 483 Antisense
GCAGTCGCTGGACCTGCAATTCTAC 524 311 499 Antisense
GCAATTCTACAGAGACTTCCCACTC 26 323 514 Antisense
TATTCTCGTTGTACTCACATTCAAT 56 665 642 Antisense
TCCGTTTTTTATCATTCTGGTCCCT 394 583 762 Antisense
GTCCCTCTCTGCTATTGTGGGTACT 53 477 781 Antisense
ATCATCTCATGGTCTGGTATCAACT 142 29 861 Antisense
GCTATGTCTCTTATTCACGAGCCGT 663 303 889 Antisense
Sequence Source Affymetrix Proprietary Database