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[191506_at] 7TM receptor, srx family

Description F09F3.12 /REP_DB=WormBase Gene ID /WP=CE09294 /TR=P90823 /GB=CAB02907.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster 6grp_total > 01      4grp_total > 04      6grp_cgc > 53      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 8.1
(-2.2)
A 		4.2
(-3)
A 		5.1
(-2.8)
A 		33.7
(3)
A 		30
B 3.7
(-2.4)
A 		7
(3)
A 		3.3
(-3)
A 		5.1
(-0.1)
A 		4
C 18.2
(-1)
A 		7.1
(-2.7)
A 		4.8
(-3)
A 		45.7
(3)
A 		41
avr 10
(-1.6) 		6.1
(-2.6) 		4.4
(-3) 		28.2
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 4.9
(-2.2)
A 		9.6
(-0.9)
A 		22.8
(3)
A 		17.8
(1.5)
A 		3.8
(-2.6)
A 		2.3
(-3)
A 		21
B 15.8
(-0.6)
A 		26.5
(3)
A 		8.5
(-3)
A 		11.3
(-2.1)
A 		16.7
(-0.3)
A 		19.3
(0.6)
A 		18
C 6.3
(-2.3)
A 		37.3
(3)
A 		2.5
(-3)
A 		6.9
(-2.2)
A 		2.3
(-3)
A 		3.3
(-2.8)
A 		35
avr 9
(-2.5) 		24.5
(3) 		11.3
(-1.7) 		12
(-1.4) 		7.6
(-3) 		8.3
(-2.8) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 3
(0.2)
A 		0.9
(-3)
A 		1.3
(-2.4)
A 		4.9
(3)
A 		4
B 1.2
(-0.3)
A 		1.7
(3)
A 		0.8
(-3)
A 		1.1
(-1)
A 		1
C 6
(1.3)
A 		2.1
(-2.6)
A 		1.7
(-3)
A 		7.7
(3)
A 		6
avr 3.4
(0.8) 		1.6
(-2.5) 		1.3
(-3) 		4.6
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.9
(-2.5)
A 		3.4
(0.9)
A 		5
(3)
A 		4.5
(2.3)
A 		1.1
(-2.2)
A 		0.5
(-3)
A 		5
B 5.5
(0)
A 		8.8
(3)
A 		2.1
(-3)
A 		3
(-2.2)
A 		6.8
(1.2)
A 		7.2
(1.6)
A 		7
C 2.3
(-2.1)
A 		11.4
(3)
A 		0.6
(-3)
A 		1.4
(-2.6)
A 		0.8
(-2.9)
A 		1.1
(-2.7)
A 		11
avr 2.9
(-2.7) 		7.9
(3) 		2.6
(-3) 		3
(-2.5) 		2.9
(-2.7) 		2.9
(-2.7) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191506_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12792
Sequence Type Exemplar sequence
Representative Public ID F09F3.12 NCBI
Target Description F09F3.12 /REP_DB=WormBase Gene ID /WP=CE09294 /TR=P90823 /GB=CAB02907.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074034(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074034 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-136) (srx-136) mRNA, complete cds. 11/11 None
GENEFINDER00000022400 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13859189:13863910:1 11/11 None
F09F3.12 ENSEMBL cdna:known chromosome:CEL140:V:13860037:13861531:1 gene:F09F3.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022394 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13860036-13861066(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, srx family
Gene Symbol srx-136
Ensembl F09F3.12
Entrez Gene 184257 Entrez gene
SwissProt P90823 EMBL-EBI
WormBase CE36287 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02907 Hypothetical protein F09F3.12 [Caenorhabditis elegans] ref|NP_506435.2| Serpentine Receptor, class X family member (srx-136) [Caenorhabditis elegans] 1.0E-159
blast CAB02907 Hypothetical protein F09F3.12 [Caenorhabditis elegans] ref|NP_506435.2| Serpentine Receptor, class X family member (srx-136) [Caenorhabditis elegans] 1.0E-126
blast CAB02908 Hypothetical protein F09F3.11 [Caenorhabditis elegans] ref|NP_506436.2| Serpentine Receptor, class X family member (srx-135) [Caenorhabditis elegans] 1.0E-123
blast CAB03212 Hypothetical protein F32H5.6 [Caenorhabditis elegans] emb|CAB04254.2| Hypothetical protein F32H5.6 [Caenorhabditis elegans] ref|NP_506315.2| Serpentine Receptor, class X family member (srx-125) [Caenorhabditis elegans] 2.0E-65
blast CAE57803 Hypothetical protein CBG00827 [Caenorhabditis briggsae] 5.0E-60
blast CAE65808 Hypothetical protein CBG10916 [Caenorhabditis briggsae] 1.0E-54
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506435.2 6 5-24,45-67,82-104,124-146,170-192,250-272
F09F3.12 6 5-24,45-67,82-104,124-146,170-192,250-272
GENEFINDER00000022400 7 33-55,70-92,112-134,282-304,345-367,387-409,484-506
Sequence
Target Sequence 
>C. ELEGANS:191506_AT
gctgttccactgggcagttttcgagtgaaaaatgacaaagtgccgagagatgcaaatgtt
tttgtcggacagttggcaggtgccggatcatatatatttggaccacttcttcacgtcggc
atgtcatcaaacagattttcatccctgtatttcccaattcaaataatgaaagcaaatcga
tatccaattacaacaatttcaattggagttgcttttatcatagctgtcgtttttacagtg
attgggctaccaaaagattgcggcttcttatacttccctgaaacactggaatggctttcc
gaggaagcgccgtgtgcaatatttcaatacgatcttctcctttactccattcttggatgt
gccgtgatttcaaactctatgaacctggcaacagcgggaagattactttttgataaggtt
ggcggcatgagtgcagctgattcgaaagtccgccgaaagaaatacctcgtcacatattgt
caaactgtacttcaagattgtctacatgtcctcgacatgattaacagtacatacacgtgg
caaatatatccagattcaatatggtttcagttcttctgtctcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGTTCCACTGGGCAGTTTTCGAG 178 295 202 Antisense
TTCTTCACGTCGGCATGTCATCAAA 246 691 308 Antisense
ACAGATTTTCATCCCTGTATTTCCC 17 107 332 Antisense
AAGATTGCGGCTTCTTATACTTCCC 597 155 455 Antisense
TTCCGAGGAAGCGCCGTGTGCAATA 80 699 498 Antisense
ATTTCAATACGATCTTCTCCTTTAC 529 15 522 Antisense
TTCTCCTTTACTCCATTCTTGGATG 231 693 536 Antisense
GGATGTGCCGTGATTTCAAACTCTA 647 513 556 Antisense
AGGTTGGCGGCATGAGTGCAGCTGA 123 57 617 Antisense
GTGCAGCTGATTCGAAAGTCCGCCG 478 479 632 Antisense
TATGGTTTCAGTTCTTCTGTCTCAC 619 655 761 Antisense
Sequence Source Affymetrix Proprietary Database