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[191505_at] 7TM chemoreceptor, str family

Description R02C2.5 /REP_DB=WormBase Gene ID /WP=CE18094 /GEN=str-121 /TR=O44544 /GB=AAC48230.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 19      4grp_total > 01      6grp_cgc > 01      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 4.9
(-2.8)
A 		3
(-3)
A 		19.2
(-1.3)
A 		60.1
(3)
A 		57
B 16.7
(-0.8)
A 		22
(0.4)
A 		6.3
(-3)
A 		34.2
(3)
A 		28
C 15.4
(-1.8)
A 		11
(-3)
A 		21.9
(-0)
A 		32.8
(3)
A 		22
avr 12.3
(-2.9) 		12
(-3) 		15.8
(-2.3) 		42.4
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 16.7
(0.8)
A 		5
(-2.6)
A 		5.5
(-2.4)
A 		3.5
(-3)
A 		24.3
(3)
A 		3.5
(-3)
A 		21
B 17.7
(3)
A 		13.7
(1.6)
A 		5.7
(-1.3)
A 		4.1
(-1.8)
A 		16.8
(2.7)
A 		0.8
(-3)
A 		17
C 28.8
(3)
A 		4.5
(-2.9)
A 		17.9
(0.3)
A 		9.4
(-1.7)
A 		12.1
(-1.1)
A 		4.2
(-3)
A 		25
avr 21.1
(3) 		7.7
(-1.4) 		9.7
(-0.7) 		5.7
(-2) 		17.7
(1.9) 		2.8
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.8
(-2.2)
A 		0.7
(-3)
A 		5
(0.2)
A 		8.8
(3)
A 		8
B 5.3
(0.9)
A 		5.4
(1)
A 		1.5
(-3)
A 		7.3
(3)
A 		6
C 5.1
(-0.4)
A 		3.2
(-3)
A 		7.6
(3)
A 		5.5
(0.1)
A 		4
avr 4.1
(-1.5) 		3.1
(-3) 		4.7
(-0.7) 		7.2
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 3.1
(-0.9)
A 		1.8
(-2.2)
A 		1.2
(-2.7)
A 		0.9
(-3)
A 		7.3
(3)
A 		0.9
(-3)
A 		6
B 6.1
(2.4)
A 		4.6
(1)
A 		1.4
(-2)
A 		1.1
(-2.3)
A 		6.8
(3)
A 		0.3
(-3)
A 		7
C 10.7
(3)
A 		1.4
(-3)
A 		4.5
(-1)
A 		1.9
(-2.7)
A 		3.9
(-1.4)
A 		1.4
(-3)
A 		9
avr 6.6
(3) 		2.6
(-1.2) 		2.4
(-1.4) 		1.3
(-2.6) 		6
(2.4) 		0.9
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191505_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15353
Sequence Type Exemplar sequence
Representative Public ID R02C2.5 NCBI
Target Description R02C2.5 /REP_DB=WormBase Gene ID /WP=CE18094 /GEN=str-121 /TR=O44544 /GB=AAC48230.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070763(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070763 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-121) (str-121) mRNA, complete cds. 10/11 None
R02C2.5 ENSEMBL cdna:known chromosome:CEL140:V:252193:254495:-1 gene:R02C2.5 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019097 8/11 Cross Hyb Matching Probes None
GENEFINDER00000019103 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:252181-254520(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-121
Ensembl R02C2.5
Entrez Gene 192002 Entrez gene
SwissProt O44544 EMBL-EBI
WormBase CE35356 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48230 Seven tm receptor protein 121 [Caenorhabditis elegans] ref|NP_503164.2| Seven TM Receptor family member (str-121) [Caenorhabditis elegans] 1.0E-69
blast AAC48262 Seven tm receptor protein 122 [Caenorhabditis elegans] ref|NP_500472.1| Seven TM Receptor family member (str-122) [Caenorhabditis elegans] 3.0E-31
blast CAE66758 Hypothetical protein CBG12112 [Caenorhabditis briggsae] 2.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 8.4E-40
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503164.2 3 5-20,40-62,72-94
R02C2.5 3 5-20,40-62,72-94
Sequence
Target Sequence 
>C. ELEGANS:191505_AT
aaagttggctacattggctatctgtattattacactgacattttcgggaatttgataata
aattggttggattttcttgggtgctctataaatcttttaattatggcatcttgtattggt
actataatcatatgtggtttgaaaacttattggtgtatggggaaagataggaagaaaatg
agcaaacggaccaaggagcttaatgatcagctgttcaagacattggtcgtacagacactt
atcccgatttgcacaatgttcgcccccgttggaactgtaatagtactaccgattttttct
attcaaattcctccagcaattgcaaatataccaagtttgtacgccgggctctatccggga
ctcgacgctgcagtcgcaattttcatgattcgagactttcgggatgcggtattttgttgt
aggctggcgacgcgtgctcccatcaatgatgtcttcttcacgtccggcaaaacatacatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGTTGGCTACATTGGCTATCTGT 563 121 532 Antisense
TGGTTGGATTTTCTTGGGTGCTCTA 181 551 595 Antisense
GGTCGTACAGACACTTATCCCGATT 13 501 756 Antisense
ATCCCGATTTGCACAATGTTCGCCC 202 39 772 Antisense
TATTCAAATTCCTCCAGCAATTGCA 552 663 831 Antisense
ATATACCAAGTTTGTACGCCGGGCT 12 19 857 Antisense
GACTCGACGCTGCAGTCGCAATTTT 363 375 890 Antisense
GATTCGAGACTTTCGGGATGCGGTA 254 431 918 Antisense
GTATTTTGTTGTAGGCTGGCGACGC 278 453 940 Antisense
CATCAATGATGTCTTCTTCACGTCC 708 211 972 Antisense
CTTCACGTCCGGCAAAACATACATC 37 219 987 Antisense
Sequence Source Affymetrix Proprietary Database